Variant report

Variant	rs59193445
Chromosome Location	chr5:127933085-127933086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58800437	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7729600	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531991	chr5:127624564-127966085	Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv427734	chr5:127805281-128088632	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127931000-127933600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:127931800-127933400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:127932000-127933200	Enhancers	Fetal Lung	lung
4	chr5:127932200-127933400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:127932400-127933400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:127932600-127933400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:127932800-127933400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:127932800-127933400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:127932800-127933600	Enhancers	Fetal Kidney	kidney
10	chr5:127933000-127933400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr5:127933000-127933400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:127933000-127933400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr5:127933000-127933600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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