Variant report

Variant	rs59200168
Chromosome Location	chr8:95811183-95811184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11986745	1.00[EUR][1000 genomes]
rs56098345	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60193291	1.00[EUR][1000 genomes]
rs61259525	1.00[EUR][1000 genomes]
rs6986723	1.00[EUR][1000 genomes]
rs7002309	1.00[EUR][1000 genomes]
rs73697035	1.00[EUR][1000 genomes]
rs73697036	1.00[EUR][1000 genomes]
rs73697037	1.00[EUR][1000 genomes]
rs73697038	1.00[EUR][1000 genomes]
rs73697039	1.00[EUR][1000 genomes]
rs73697040	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95786200-95811600	Weak transcription	Spleen	Spleen
2	chr8:95786200-95812800	Weak transcription	Gastric	stomach
3	chr8:95791400-95812400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:95792000-95811600	Weak transcription	Thymus	Thymus
5	chr8:95799200-95814400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr8:95799800-95811400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:95810000-95814000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:95810200-95811400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:95810200-95818800	Weak transcription	K562	blood
10	chr8:95810200-95819600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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