Variant report

Variant	rs592041
Chromosome Location	chr10:96954473-96954474
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10786187	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10786189	0.86[ASN][1000 genomes]
rs10786190	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10882543	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10882546	0.86[ASN][1000 genomes]
rs11188189	0.86[ASN][1000 genomes]
rs11188190	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11188192	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11188196	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11188197	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11188200	0.86[ASN][1000 genomes]
rs12261370	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12782731	0.86[ASN][1000 genomes]
rs1575930	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2449809	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2449810	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2478477	0.83[ASN][1000 genomes]
rs2478478	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2478479	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2901829	0.86[ASN][1000 genomes]
rs4532969	0.86[ASN][1000 genomes]
rs513661	0.80[ASN][1000 genomes]
rs585381	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs591157	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs592055	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs594402	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs604022	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs604373	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs610046	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs610579	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs611416	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs613340	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs614682	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs616721	0.86[AMR][1000 genomes]
rs620196	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs626415	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs632113	0.86[ASN][1000 genomes]
rs632979	0.82[ASN][1000 genomes]
rs634269	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs637724	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs638895	0.86[ASN][1000 genomes]
rs641198	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs644437	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs646845	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs648638	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6583980	0.86[ASN][1000 genomes]
rs663473	0.86[ASN][1000 genomes]
rs666679	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs666786	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs667499	0.82[ASN][1000 genomes]
rs672428	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs672860	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs675332	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs678165	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs679025	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs680918	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs682477	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7079861	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7082502	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7087492	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7087618	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7089303	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7094658	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs752415	0.86[ASN][1000 genomes]
rs752416	0.86[ASN][1000 genomes]
rs7907627	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7907827	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7921561	0.86[ASN][1000 genomes]
rs815265	0.86[ASN][1000 genomes]
rs815266	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs815267	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs815268	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs815269	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs815270	0.86[ASN][1000 genomes]
rs943313	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs943315	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1834151	chr10:96925446-96992955	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv825527	chr10:96954221-96954660	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv820063	chr10:96954277-96954895	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96943400-96955200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:96944000-96954800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:96944000-96955200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:96944000-96955800	Weak transcription	Aorta	Aorta
5	chr10:96944000-96961400	Weak transcription	Fetal Intestine Small	intestine
6	chr10:96944200-96990400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:96948600-96955200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:96949800-96980600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:96952800-96974600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:96953800-96954600	Enhancers	Fetal Muscle Leg	muscle
11	chr10:96953800-96954600	Flanking Active TSS	Fetal Thymus	thymus
12	chr10:96953800-96956200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:96953800-96956400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr10:96953800-96956800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:96953800-96956800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:96954000-96954600	Enhancers	Stomach Mucosa	stomach
17	chr10:96954000-96955800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:96954200-96954600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:96954200-96954600	Enhancers	Pancreas	Pancrea
20	chr10:96954200-96955400	Enhancers	HepG2	liver
21	chr10:96954400-96954600	Enhancers	HSMMtube	muscle
22	chr10:96954400-96954800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr10:96954400-96955800	Weak transcription	Thymus	Thymus
24	chr10:96954400-96956400	Enhancers	HUES64 Cell Line	embryonic stem cell

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