Variant report

Variant	rs59204316
Chromosome Location	chr2:189611514-189611515
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10497693	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830367	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830384	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830391	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830433	1.00[AMR][1000 genomes]
rs16830479	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830491	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830512	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830517	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830522	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830548	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830553	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830566	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830569	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57540882	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73037423	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73037433	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73048243	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73048244	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73048252	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000932	chr2:189542210-189677277	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536088	chr2:189542210-189677277	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1842768	chr2:189555506-189635696	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv875606	chr2:189579045-189688463	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv875607	chr2:189579045-189711790	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1008847	chr2:189603961-189769705	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189611400-189611800	Enhancers	Muscle Satellite Cultured Cells	--

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