Variant report

Variant	rs59205227
Chromosome Location	chr6:11306747-11306748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16871271	0.88[EUR][1000 genomes]
rs2066919	0.85[ASN][1000 genomes]
rs2142742	1.00[ASN][1000 genomes]
rs28490449	0.88[EUR][1000 genomes]
rs56164686	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56817967	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57614751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60511959	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6903357	0.88[EUR][1000 genomes]
rs6904814	0.88[EUR][1000 genomes]
rs6918108	0.88[EUR][1000 genomes]
rs73362879	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73721557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11293200-11307600	Weak transcription	Placenta	Placenta
2	chr6:11296400-11310200	Weak transcription	Spleen	Spleen
3	chr6:11296400-11310400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:11297000-11310200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:11298200-11310400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:11299600-11310600	Weak transcription	Thymus	Thymus
7	chr6:11299800-11314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:11300200-11310400	Weak transcription	Gastric	stomach
9	chr6:11300200-11310400	Weak transcription	Lung	lung
10	chr6:11303800-11307000	Strong transcription	Primary T cells from cord blood	blood
11	chr6:11303800-11307000	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:11304400-11306800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr6:11304800-11307400	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:11305000-11306800	Strong transcription	Primary B cells from cord blood	blood
15	chr6:11305000-11307000	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr6:11305000-11307000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:11305000-11307200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:11305200-11306800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr6:11305200-11307000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr6:11305200-11307400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr6:11305800-11310400	Weak transcription	HepG2	liver
22	chr6:11305800-11319400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:11306000-11307200	Strong transcription	GM12878-XiMat	blood
24	chr6:11306000-11319400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:11306200-11313200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:11306200-11318000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:11306400-11318000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:11306400-11319400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:11306400-11326800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:11306600-11310600	Weak transcription	Fetal Thymus	thymus
31	chr6:11306600-11318200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:11306600-11319200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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