Variant report

Variant	rs59227453
Chromosome Location	chr1:168323924-168323925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10465552	0.92[ASN][1000 genomes]
rs16860403	0.92[ASN][1000 genomes]
rs16860434	0.84[ASN][1000 genomes]
rs16860445	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1886004	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2076061	0.92[ASN][1000 genomes]
rs2223293	0.84[ASN][1000 genomes]
rs2235299	0.90[ASN][1000 genomes]
rs2268561	0.84[ASN][1000 genomes]
rs2268563	0.88[ASN][1000 genomes]
rs2268565	0.88[ASN][1000 genomes]
rs2268566	0.88[ASN][1000 genomes]
rs2284762	0.97[ASN][1000 genomes]
rs57956428	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6427125	0.90[ASN][1000 genomes]
rs6672853	0.92[ASN][1000 genomes]
rs7512612	0.88[ASN][1000 genomes]
rs7512814	0.88[ASN][1000 genomes]
rs7512951	0.88[ASN][1000 genomes]
rs7551330	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831825	chr1:168179175-168353062	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002007	chr1:168179463-168375973	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168318400-168324000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr1:168318400-168324200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:168318400-168324200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:168318400-168329200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:168318400-168329400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr1:168318400-168329400	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:168323600-168325400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr1:168323800-168324600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr1:168323800-168324800	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr1:168323800-168325400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr1:168323800-168325600	Active TSS	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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