Variant report

Variant	rs59230578
Chromosome Location	chr1:210285439-210285440
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10127635	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1016480	1.00[EUR][1000 genomes]
rs1016481	1.00[EUR][1000 genomes]
rs10863808	1.00[EUR][1000 genomes]
rs11119380	1.00[EUR][1000 genomes]
rs11119393	1.00[EUR][1000 genomes]
rs11119395	1.00[EUR][1000 genomes]
rs11119402	1.00[EUR][1000 genomes]
rs11119404	1.00[EUR][1000 genomes]
rs11119405	0.82[AMR][1000 genomes]
rs11119408	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119411	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11801400	1.00[EUR][1000 genomes]
rs11810848	1.00[EUR][1000 genomes]
rs11811996	1.00[EUR][1000 genomes]
rs12059259	1.00[EUR][1000 genomes]
rs12073806	1.00[EUR][1000 genomes]
rs12078871	1.00[EUR][1000 genomes]
rs12079711	1.00[EUR][1000 genomes]
rs12080332	1.00[EUR][1000 genomes]
rs12082067	1.00[EUR][1000 genomes]
rs12085355	1.00[EUR][1000 genomes]
rs12086145	1.00[EUR][1000 genomes]
rs12088415	1.00[EUR][1000 genomes]
rs12089636	1.00[EUR][1000 genomes]
rs12090781	1.00[EUR][1000 genomes]
rs12092551	1.00[EUR][1000 genomes]
rs12093254	1.00[EUR][1000 genomes]
rs12239153	1.00[EUR][1000 genomes]
rs12239590	1.00[EUR][1000 genomes]
rs12239724	1.00[EUR][1000 genomes]
rs1334572	1.00[EUR][1000 genomes]
rs13376651	1.00[EUR][1000 genomes]
rs1413698	1.00[EUR][1000 genomes]
rs1591300	1.00[EUR][1000 genomes]
rs1602289	1.00[EUR][1000 genomes]
rs17015476	1.00[EUR][1000 genomes]
rs17015480	1.00[EUR][1000 genomes]
rs17015532	1.00[EUR][1000 genomes]
rs17015561	1.00[EUR][1000 genomes]
rs17015638	1.00[EUR][1000 genomes]
rs17015652	1.00[EUR][1000 genomes]
rs17041975	1.00[EUR][1000 genomes]
rs2018942	1.00[EUR][1000 genomes]
rs2130626	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2130627	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2130628	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2171988	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34400113	1.00[EUR][1000 genomes]
rs35046399	1.00[EUR][1000 genomes]
rs56075770	1.00[EUR][1000 genomes]
rs56105015	1.00[EUR][1000 genomes]
rs56271040	1.00[EUR][1000 genomes]
rs56733441	1.00[EUR][1000 genomes]
rs57082045	1.00[EUR][1000 genomes]
rs57790572	1.00[EUR][1000 genomes]
rs58775140	1.00[EUR][1000 genomes]
rs61049229	1.00[EUR][1000 genomes]
rs6540577	1.00[EUR][1000 genomes]
rs6689269	1.00[EUR][1000 genomes]
rs6692116	1.00[EUR][1000 genomes]
rs6692822	1.00[EUR][1000 genomes]
rs73066422	1.00[EUR][1000 genomes]
rs73066498	1.00[EUR][1000 genomes]
rs73068419	1.00[EUR][1000 genomes]
rs73072224	1.00[EUR][1000 genomes]
rs74156109	1.00[EUR][1000 genomes]
rs74156117	1.00[EUR][1000 genomes]
rs74156272	1.00[EUR][1000 genomes]
rs7512760	1.00[EUR][1000 genomes]
rs7515629	1.00[EUR][1000 genomes]
rs7523089	1.00[EUR][1000 genomes]
rs7530907	1.00[EUR][1000 genomes]
rs7536495	1.00[EUR][1000 genomes]
rs7556078	1.00[EUR][1000 genomes]
rs970788	1.00[EUR][1000 genomes]
rs978754	1.00[EUR][1000 genomes]
rs9803620	1.00[EUR][1000 genomes]
rs9970894	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv873140	chr1:210068117-210335644	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1821002	chr1:210108473-210291476	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv873141	chr1:210228131-210296910	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv873142	chr1:210233610-210291121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv873143	chr1:210233610-210296910	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv873144	chr1:210252522-210347417	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv818800	chr1:210258653-210304319	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3452678	chr1:210284385-210289804	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	esv3452679	chr1:210284385-210289804	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210268400-210287400	Weak transcription	Brain Germinal Matrix	brain
2	chr1:210274200-210290600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:210280000-210290600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:210283000-210298000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:210285200-210285600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:210285400-210286400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
7	chr1:210285400-210288400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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