Variant report

Variant	rs59234756
Chromosome Location	chr1:86762506-86762507
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57534123	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871223	chr1:86724523-86784804	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv871866	chr1:86726619-86851420	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86761600-86762600	Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr1:86761600-86762800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:86761600-86762800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:86761600-86762800	Enhancers	Psoas Muscle	Psoas
5	chr1:86761600-86763200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:86761800-86762800	Enhancers	Primary hematopoietic stem cells	blood
7	chr1:86761800-86763200	Enhancers	HSMMtube	muscle
8	chr1:86762000-86762600	Enhancers	Fetal Stomach	stomach
9	chr1:86762000-86762800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:86762000-86762800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:86762000-86763200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr1:86762200-86762800	Active TSS	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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