Variant report

Variant	rs59236653
Chromosome Location	chr15:51575348-51575349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:30)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:30 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:51575280-51575430	GM12868	blood:	n/a	n/a
2	IRF1	chr15:51575302-51575545	K562	blood:	n/a	n/a
3	ZNF143	chr15:51575311-51575543	GM12878	blood:	n/a	n/a
4	IRF4	chr15:51575168-51575591	GM12878	blood:	n/a	n/a
5	CTCF	chr15:51575280-51575430	GM12865	blood:	n/a	n/a
6	SPI1	chr15:51575131-51575525	GM12891	blood:	n/a	n/a
7	IRF4	chr15:51575162-51575545	GM12878	blood:	n/a	n/a
8	SMC3	chr15:51575245-51575619	GM12878	blood:	n/a	n/a
9	RAD21	chr15:51575325-51575601	Hela-S3	cervix:	n/a	n/a
10	RAD21	chr15:51575318-51575589	H1-hESC	embryonic stem cell:	n/a	n/a
11	SPI1	chr15:51575145-51575563	GM12878	blood:	n/a	n/a
12	RAD21	chr15:51575301-51575602	GM12878	blood:	n/a	n/a
13	STAT3	chr15:51575088-51575581	GM12878	blood:	n/a	n/a
14	CTCF	chr15:51575340-51575490	GM12866	blood:	n/a	n/a
15	CTCF	chr15:51575240-51575390	RPTEC	kidney:	n/a	n/a
16	SPI1	chr15:51575226-51575501	GM12878	blood:	n/a	n/a
17	CTCF	chr15:51575299-51575617	GM12878	blood:	n/a	n/a
18	CTCF	chr15:51575340-51575490	GM12872	blood:	n/a	n/a
19	SPI1	chr15:51574975-51575778	GM12878	blood:	n/a	n/a
20	CTCF	chr15:51575320-51575470	GM12871	blood:	n/a	n/a
21	CTCF	chr15:51575340-51575490	RPTEC	kidney:	n/a	n/a
22	SPI1	chr15:51575153-51575525	GM12891	blood:	n/a	n/a
23	SMC3	chr15:51575336-51575525	Hela-S3	cervix:	n/a	n/a
24	RAD21	chr15:51575246-51575632	GM12878	blood:	n/a	n/a
25	CTCF	chr15:51575315-51575555	Spleen_OC	spleen:	n/a	n/a
26	CTCF	chr15:51575260-51575410	GM12866	blood:	n/a	n/a
27	CTCF	chr15:51575332-51575585	K562	blood:	n/a	n/a
28	CTCF	chr15:51575340-51575490	GM12874	blood:	n/a	n/a
29	CTCF	chr15:51575280-51575430	HMEC	breast:	n/a	n/a
30	RAD21	chr15:51575298-51575526	GM12878	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51568163..51571047-chr15:51573352..51576170,3	MCF-7	breast:
2	chr15:51574618..51575812-chr15:51673135..51674386,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259701	TF binding region
CYP19A1	TF binding region
ENSG00000137869	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16964253	0.81[AFR][1000 genomes]
rs1902581	0.81[AFR][1000 genomes]
rs28757116	0.81[AFR][1000 genomes]
rs57973062	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	esv34532	chr15:51276128-51752856	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv2758382	chr15:51282257-51830339	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv2760031	chr15:51282257-51830339	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	esv2757600	chr15:51352249-51783981	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv904215	chr15:51542193-51673125	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
9	esv3398984	chr15:51574559-51577866	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51573400-51575400	Enhancers	Brain Hippocampus Middle	brain
2	chr15:51574400-51575400	Enhancers	Brain Angular Gyrus	brain
3	chr15:51574400-51576200	Enhancers	Primary B cells from peripheral blood	blood
4	chr15:51574600-51576600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:51574800-51575400	Enhancers	Brain Substantia Nigra	brain
6	chr15:51574800-51575600	Weak transcription	Adipose Nuclei	Adipose
7	chr15:51574800-51576000	Enhancers	Primary B cells from cord blood	blood
8	chr15:51575000-51575600	Flanking Active TSS	GM12878-XiMat	blood
9	chr15:51575000-51575800	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr15:51575000-51575800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:51575000-51575800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr15:51575000-51576000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:51575000-51576000	Active TSS	Brain Anterior Caudate	brain
14	chr15:51575000-51577800	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:51575000-51578600	Weak transcription	HepG2	liver
16	chr15:51575000-51580400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:51575000-51580400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr15:51575000-51580400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:51575000-51580400	Weak transcription	NHDF-Ad	bronchial
20	chr15:51575200-51575400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:51575200-51575400	Active TSS	Duodenum Mucosa	Duodenum
22	chr15:51575200-51578400	Strong transcription	Placenta	Placenta
23	chr15:51575200-51579400	Weak transcription	Stomach Mucosa	stomach
24	chr15:51575200-51580600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:51575200-51580600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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