Variant report

Variant	rs59237579
Chromosome Location	chr22:30102643-30102644
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:30096968..30098760-chr22:30102459..30104662,3	MCF-7	breast:
2	chr22:30097362..30099278-chr22:30100636..30102663,2	K562	blood:
3	chr22:30096975..30100180-chr22:30101896..30105574,4	K562	blood:
4	chr22:30101634..30103485-chr22:30110793..30113259,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11090582	1.00[EUR][1000 genomes]
rs16988011	1.00[EUR][1000 genomes]
rs16988043	1.00[EUR][1000 genomes]
rs16988044	1.00[EUR][1000 genomes]
rs16988062	1.00[EUR][1000 genomes]
rs56783715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57014206	1.00[ASN][1000 genomes]
rs58113244	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58538392	1.00[EUR][1000 genomes]
rs58643523	1.00[EUR][1000 genomes]
rs58808486	0.91[ASN][1000 genomes]
rs59172206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59422664	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59542747	1.00[EUR][1000 genomes]
rs59698661	0.91[ASN][1000 genomes]
rs59902813	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60020246	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6006260	0.91[ASN][1000 genomes]
rs60670183	0.91[ASN][1000 genomes]
rs60751623	0.90[ASN][1000 genomes]
rs60965931	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61399074	0.91[ASN][1000 genomes]
rs61432554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61740613	0.90[ASN][1000 genomes]
rs7285384	0.91[ASN][1000 genomes]
rs7286724	1.00[EUR][1000 genomes]
rs7288777	0.91[ASN][1000 genomes]
rs7290848	1.00[EUR][1000 genomes]
rs73394816	1.00[EUR][1000 genomes]
rs73394842	1.00[EUR][1000 genomes]
rs8136249	0.90[ASN][1000 genomes]
rs8139885	0.90[ASN][1000 genomes]
rs9614068	1.00[AFR][1000 genomes]
rs9625869	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529742	chr22:29677909-30274388	Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv529737	chr22:30060946-30109561	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv914963	chr22:30075052-30133579	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv914964	chr22:30081715-30150549	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv515720	chr22:30081715-30163526	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv914965	chr22:30086144-30112226	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv914966	chr22:30088442-30138548	Weak transcription Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv1816879	chr22:30096309-30126906	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv1065072	chr22:30102176-30155245	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30095800-30103000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr22:30096000-30103600	Enhancers	Fetal Brain Male	brain
3	chr22:30096200-30103200	Enhancers	Fetal Brain Female	brain
4	chr22:30096400-30103000	Enhancers	Brain Anterior Caudate	brain
5	chr22:30096400-30103200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr22:30096400-30103600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr22:30096400-30107400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr22:30096600-30103800	Enhancers	Brain Cingulate Gyrus	brain
9	chr22:30097000-30106400	Weak transcription	Psoas Muscle	Psoas
10	chr22:30098000-30102800	Weak transcription	Esophagus	oesophagus
11	chr22:30098800-30115600	Weak transcription	Right Atrium	heart
12	chr22:30099400-30103600	Enhancers	Brain Germinal Matrix	brain
13	chr22:30099600-30103200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr22:30099600-30103400	Enhancers	Gastric	stomach
15	chr22:30099800-30103000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr22:30100000-30103200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr22:30100200-30103200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr22:30100800-30103600	Enhancers	Brain Substantia Nigra	brain
19	chr22:30101000-30102800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr22:30101000-30103200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr22:30101000-30103400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr22:30101000-30103600	Enhancers	Brain Angular Gyrus	brain
23	chr22:30101400-30104800	Weak transcription	HSMMtube	muscle
24	chr22:30101600-30103800	Enhancers	Brain Hippocampus Middle	brain
25	chr22:30102000-30102800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr22:30102200-30102800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr22:30102200-30102800	Enhancers	Spleen	Spleen
28	chr22:30102200-30103000	Enhancers	H1 Cell Line	embryonic stem cell
29	chr22:30102200-30103000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr22:30102200-30103000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
31	chr22:30102400-30102800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr22:30102400-30103000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
33	chr22:30102400-30103600	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr22:30102600-30102800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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