Variant report

Variant	rs59242497
Chromosome Location	chr7:47785867-47785868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1377428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1377429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17151143	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17172900	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4570057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57455600	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58439929	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59214665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61011614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61228121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325875	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325881	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325884	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325886	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325888	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73325893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325899	1.00[AFR][1000 genomes]
rs73325901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327618	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1015163	chr7:47734913-47832389	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv538831	chr7:47734913-47832389	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv830990	chr7:47767540-47837584	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47774400-47802600	Weak transcription	Pancreas	Pancrea
2	chr7:47781800-47795400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:47784000-47787600	Weak transcription	HepG2	liver
4	chr7:47784200-47786200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:47784200-47787800	Weak transcription	A549	lung

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