Variant report

Variant	rs59246231
Chromosome Location	chr3:22977991-22977992
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57504733	0.87[ASN][1000 genomes]
rs58832192	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59413625	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61570367	0.94[ASN][1000 genomes]
rs9713200	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3364617	chr3:22975148-22978146	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22971000-22978400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:22971000-22978800	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:22971200-22979000	Weak transcription	Ovary	ovary
4	chr3:22976000-22978200	Enhancers	Fetal Lung	lung
5	chr3:22976600-22981800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:22976800-22978200	Weak transcription	Fetal Stomach	stomach
7	chr3:22977200-22978600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:22977200-22978600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:22977200-22979000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:22977600-22978200	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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