Variant report

Variant	rs59258577
Chromosome Location	chr2:11493653-11493654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56263305	1.00[AMR][1000 genomes]
rs61452244	1.00[AMR][1000 genomes]
rs6738785	1.00[AMR][1000 genomes]
rs73915161	1.00[AMR][1000 genomes]
rs73915170	1.00[AMR][1000 genomes]
rs73915172	1.00[AMR][1000 genomes]
rs73915173	1.00[AMR][1000 genomes]
rs7591028	1.00[AMR][1000 genomes]
rs7596587	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11485800-11497400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:11485800-11497400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:11486200-11493800	Weak transcription	Stomach Mucosa	stomach
4	chr2:11488800-11494000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:11489000-11495600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:11489400-11494600	Weak transcription	Fetal Intestine Small	intestine
7	chr2:11489400-11496800	Weak transcription	Adipose Nuclei	Adipose
8	chr2:11492600-11500600	Enhancers	Fetal Intestine Large	intestine
9	chr2:11493000-11495200	Enhancers	Lung	lung
10	chr2:11493400-11494800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr2:11493600-11494000	Enhancers	HepG2	liver
12	chr2:11493600-11494800	Weak transcription	Placenta	Placenta
13	chr2:11493600-11496800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:11493600-11497400	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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