Variant report

Variant	rs59261731
Chromosome Location	chr10:38093030-38093031
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv982874	chr10:38092839-38111415	ZNF genes & repeats Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38081200-38097200	Weak transcription	Aorta	Aorta
2	chr10:38085400-38100800	Weak transcription	Left Ventricle	heart
3	chr10:38087400-38094600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:38090000-38093200	Weak transcription	Brain Substantia Nigra	brain
5	chr10:38090400-38101000	Weak transcription	HepG2	liver
6	chr10:38090800-38102200	Weak transcription	Brain Angular Gyrus	brain
7	chr10:38091200-38094000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:38091400-38094000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:38091800-38102400	Weak transcription	Brain Anterior Caudate	brain
10	chr10:38092600-38094200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:38092600-38105000	Weak transcription	Pancreas	Pancrea
12	chr10:38093000-38093200	Weak transcription	Ovary	ovary
13	chr10:38093000-38095200	Weak transcription	Adipose Nuclei	Adipose
14	chr10:38093000-38095400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:38093000-38098800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:38093000-38102200	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links