Variant report

Variant	rs59264213
Chromosome Location	chr1:86743021-86743022
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1998450	1.00[ASN][1000 genomes]
rs2146566	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56144844	1.00[ASN][1000 genomes]
rs59869307	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61302163	1.00[ASN][1000 genomes]
rs6420974	0.81[ASN][1000 genomes]
rs72718057	1.00[ASN][1000 genomes]
rs72718058	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72718060	1.00[ASN][1000 genomes]
rs72718063	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72718064	1.00[ASN][1000 genomes]
rs72718065	1.00[ASN][1000 genomes]
rs72718068	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72718070	1.00[ASN][1000 genomes]
rs72718071	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7520020	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7521210	1.00[ASN][1000 genomes]
rs7523028	1.00[ASN][1000 genomes]
rs9433452	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871223	chr1:86724523-86784804	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv871866	chr1:86726619-86851420	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86742200-86743800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:86742400-86744200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links