Variant report

Variant	rs59269807
Chromosome Location	chr11:63378167-63378168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr11:63377921-63378711	HEK293-T-REx	kidney:	n/a	chr11:63378293-63378314
2	KAP1	chr11:63378159-63379083	U2OS	brain:	n/a	n/a
3	EGR1	chr11:63378096-63378554	H1-hESC	embryonic stem cell:	n/a	chr11:63378319-63378332 chr11:63378314-63378336 chr11:63378318-63378332 chr11:63378318-63378333 chr11:63378319-63378332 chr11:63378320-63378331 chr11:63378320-63378330 chr11:63378319-63378332

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63376691..63378525-chr11:63379953..63383001,3	K562	blood:

Variant related genes	Relation type
PLA2G16	TF binding region
ENSG00000176485	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv32927	chr11:63377277-63387923	Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63356800-63381000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:63357600-63380400	Weak transcription	NHLF	lung
3	chr11:63371000-63380400	Weak transcription	Aorta	Aorta
4	chr11:63374000-63378200	Enhancers	Placenta	Placenta
5	chr11:63374600-63380200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:63374800-63378400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:63374800-63380400	Weak transcription	K562	blood
8	chr11:63375000-63378600	Enhancers	NH-A	brain
9	chr11:63375600-63378400	Enhancers	HMEC	breast
10	chr11:63375600-63378400	Enhancers	HSMM	muscle
11	chr11:63375800-63378200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:63375800-63378200	Enhancers	Duodenum Mucosa	Duodenum
13	chr11:63375800-63378400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:63375800-63378800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:63375800-63380200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:63375800-63380400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:63376200-63378400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr11:63376200-63378600	Enhancers	Small Intestine	intestine
19	chr11:63376200-63378600	Enhancers	Stomach Mucosa	stomach
20	chr11:63376200-63379200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr11:63376400-63378200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
22	chr11:63376400-63378400	Enhancers	Right Ventricle	heart
23	chr11:63376400-63378600	Flanking Active TSS	Brain Substantia Nigra	brain
24	chr11:63376400-63379400	Flanking Active TSS	Brain Cingulate Gyrus	brain
25	chr11:63376600-63378200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:63376600-63378200	Enhancers	Lung	lung
27	chr11:63376600-63378200	Enhancers	Rectal Smooth Muscle	rectum
28	chr11:63376600-63378400	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr11:63376600-63378400	Enhancers	Colonic Mucosa	Colon
30	chr11:63376600-63379400	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr11:63376800-63378400	Enhancers	Psoas Muscle	Psoas
32	chr11:63376800-63378600	Enhancers	Fetal Muscle Leg	muscle
33	chr11:63376800-63378600	Enhancers	Left Ventricle	heart
34	chr11:63376800-63378600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr11:63376800-63378800	Enhancers	Fetal Muscle Trunk	muscle
36	chr11:63376800-63380400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr11:63376800-63380400	Enhancers	A549	lung
38	chr11:63377000-63378200	Enhancers	H9 Cell Line	embryonic stem cell
39	chr11:63377000-63378200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr11:63377000-63378400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:63377000-63378400	Enhancers	Gastric	stomach
42	chr11:63377000-63378400	Enhancers	Spleen	Spleen
43	chr11:63377000-63378600	Enhancers	Right Atrium	heart
44	chr11:63377000-63379200	Enhancers	Hela-S3	cervix
45	chr11:63377000-63380400	Weak transcription	Fetal Kidney	kidney
46	chr11:63377200-63380400	Weak transcription	GM12878-XiMat	blood
47	chr11:63377400-63378400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr11:63377400-63378400	Flanking Active TSS	Brain Angular Gyrus	brain
49	chr11:63377400-63378800	Enhancers	Colon Smooth Muscle	Colon
50	chr11:63377400-63379200	Enhancers	HepG2	liver

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