Variant report

Variant	rs59270005
Chromosome Location	chr21:37771695-37771696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10483033	1.00[EUR][1000 genomes]
rs11909470	1.00[EUR][1000 genomes]
rs11909757	1.00[EUR][1000 genomes]
rs11910005	1.00[EUR][1000 genomes]
rs11910447	1.00[EUR][1000 genomes]
rs11911904	1.00[EUR][1000 genomes]
rs16994069	1.00[EUR][1000 genomes]
rs28688747	1.00[EUR][1000 genomes]
rs57154050	1.00[EUR][1000 genomes]
rs59261999	1.00[EUR][1000 genomes]
rs61094968	1.00[EUR][1000 genomes]
rs73381587	1.00[EUR][1000 genomes]
rs73381588	1.00[EUR][1000 genomes]
rs73381599	1.00[EUR][1000 genomes]
rs73381601	1.00[EUR][1000 genomes]
rs73383707	1.00[EUR][1000 genomes]
rs73383713	1.00[EUR][1000 genomes]
rs73383714	1.00[EUR][1000 genomes]
rs73383715	1.00[EUR][1000 genomes]
rs73383722	1.00[EUR][1000 genomes]
rs73385706	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33578	chr21:37488312-37819627	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37758400-37772000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr21:37758400-37772000	Weak transcription	Ovary	ovary
3	chr21:37758400-37788000	Weak transcription	Colonic Mucosa	Colon
4	chr21:37758400-37792200	Weak transcription	Fetal Kidney	kidney
5	chr21:37758400-37793400	Weak transcription	Aorta	Aorta
6	chr21:37758400-37794600	Weak transcription	Left Ventricle	heart
7	chr21:37758400-37794800	Weak transcription	Right Ventricle	heart
8	chr21:37758600-37773000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr21:37758600-37774600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr21:37758600-37774600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr21:37758600-37774800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr21:37758600-37774800	Weak transcription	NHDF-Ad	bronchial
13	chr21:37758600-37775200	Weak transcription	Primary T cells from cord blood	blood
14	chr21:37758600-37777400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr21:37758600-37777600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr21:37758600-37780400	Weak transcription	HUVEC	blood vessel
17	chr21:37758600-37783600	Weak transcription	Brain Germinal Matrix	brain
18	chr21:37758600-37783800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr21:37758600-37783800	Weak transcription	Spleen	Spleen
20	chr21:37758600-37785000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr21:37758600-37785000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr21:37758600-37785600	Weak transcription	Adipose Nuclei	Adipose
23	chr21:37758600-37787400	Weak transcription	Primary B cells from cord blood	blood
24	chr21:37758600-37790600	Weak transcription	Brain Anterior Caudate	brain
25	chr21:37758600-37790800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr21:37758600-37791000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr21:37758600-37793400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr21:37758600-37794200	Weak transcription	Liver	Liver
29	chr21:37758600-37797600	Weak transcription	HSMM	muscle
30	chr21:37758800-37773000	Weak transcription	Esophagus	oesophagus
31	chr21:37758800-37774600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr21:37758800-37774600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr21:37758800-37775000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr21:37758800-37775000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr21:37758800-37780400	Weak transcription	Fetal Lung	lung
36	chr21:37758800-37785200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr21:37758800-37785200	Weak transcription	Pancreas	Pancrea
38	chr21:37758800-37785400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr21:37758800-37795000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr21:37759000-37774400	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr21:37759000-37780400	Weak transcription	Hela-S3	cervix
42	chr21:37761200-37775800	Weak transcription	HSMMtube	muscle
43	chr21:37761400-37774600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr21:37761400-37775600	Weak transcription	Brain Substantia Nigra	brain
45	chr21:37761600-37772000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr21:37761600-37773000	Weak transcription	GM12878-XiMat	blood
47	chr21:37761600-37774400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr21:37761600-37775800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr21:37761600-37775800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr21:37761600-37779200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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