Variant report

Variant	rs59272653
Chromosome Location	chr19:27964799-27964800
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 242 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs55736350	1.00[AMR][1000 genomes]
rs55785210	1.00[AMR][1000 genomes]
rs55870466	0.85[AFR][1000 genomes]
rs56068210	1.00[AMR][1000 genomes]
rs56099535	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56139174	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56249098	1.00[AMR][1000 genomes]
rs56249906	1.00[AMR][1000 genomes]
rs56699986	1.00[AMR][1000 genomes]
rs56851229	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57777464	1.00[AMR][1000 genomes]
rs58150550	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58250326	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58609269	1.00[AMR][1000 genomes]
rs58879266	1.00[AMR][1000 genomes]
rs58968251	0.90[AFR][1000 genomes]
rs59143791	1.00[AMR][1000 genomes]
rs60563975	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60622918	1.00[AMR][1000 genomes]
rs61035429	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61171499	1.00[AMR][1000 genomes]
rs61506688	1.00[AMR][1000 genomes]
rs66489462	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs66940079	0.82[AFR][1000 genomes]
rs67295593	0.83[AFR][1000 genomes]
rs67640670	0.96[AFR][1000 genomes]
rs7339484	1.00[AMR][1000 genomes]
rs7339630	1.00[AMR][1000 genomes]
rs7339726	1.00[AMR][1000 genomes]
rs73517233	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517236	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517254	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517270	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517279	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517284	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517287	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517295	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517298	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518242	1.00[AMR][1000 genomes]
rs73519280	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73519293	1.00[AMR][1000 genomes]
rs73520249	1.00[AMR][1000 genomes]
rs73521610	1.00[AMR][1000 genomes]
rs73521620	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521625	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521626	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521642	1.00[AMR][1000 genomes]
rs73521645	1.00[AMR][1000 genomes]
rs73521664	1.00[AMR][1000 genomes]
rs73531011	1.00[AMR][1000 genomes]
rs73531027	1.00[AMR][1000 genomes]
rs73531069	1.00[AMR][1000 genomes]
rs73531074	1.00[AMR][1000 genomes]
rs73533114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533128	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533138	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533148	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533161	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533192	1.00[AMR][1000 genomes]
rs73533195	1.00[AMR][1000 genomes]
rs73535233	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73535237	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73535241	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73535251	1.00[AMR][1000 genomes]
rs73931621	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8189723	1.00[AMR][1000 genomes]
rs8189815	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:175 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961285	chr19:27731783-28407818	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	esv1792884	chr19:27732000-27972553	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
3	esv1813820	chr19:27732000-27972553	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
4	esv1817017	chr19:27732000-27972553	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
5	esv1818457	chr19:27732000-27972553	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
6	esv1829019	chr19:27732000-27972553	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
7	esv1813626	chr19:27732000-28036744	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
8	nsv579125	chr19:27736063-28172667	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
9	esv3435760	chr19:27739988-28047842	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
10	nsv1061985	chr19:27747981-27965503	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv1066161	chr19:27747981-27975389	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv1065724	chr19:27747981-28000838	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv1062651	chr19:27747981-28016281	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv1060682	chr19:27747981-28019857	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv1057162	chr19:27747981-28032388	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv1066189	chr19:27747981-28034718	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv1065405	chr19:27747981-28036407	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv1065571	chr19:27747981-28041144	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv1065696	chr19:27747981-28041818	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv1055914	chr19:27747981-28065600	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
21	nsv1065117	chr19:27747981-28069337	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv1065098	chr19:27747981-28070187	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv1062357	chr19:27747981-28070409	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
24	nsv1059313	chr19:27747981-28072947	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
25	nsv1063001	chr19:27747981-28080753	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv1055959	chr19:27747981-28080803	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
27	nsv1066032	chr19:27747981-28081375	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
28	nsv1062077	chr19:27747981-28087377	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
29	nsv1059936	chr19:27747981-28123278	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv1060114	chr19:27747981-28127652	ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
31	nsv1062493	chr19:27747981-28144500	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
32	nsv1064177	chr19:27747981-28150676	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
33	nsv1066251	chr19:27747981-28163448	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
34	nsv1067376	chr19:27747981-28173873	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	nsv1056628	chr19:27747981-28180915	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
36	nsv1060972	chr19:27747981-28195015	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
37	nsv1060017	chr19:27747981-28249070	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
38	nsv1060889	chr19:27747981-28256350	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
39	nsv1066699	chr19:27747981-28273601	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
40	nsv1060674	chr19:27747981-28299996	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
41	nsv1065481	chr19:27747981-28413175	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
42	nsv1059366	chr19:27747981-28414634	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
43	nsv1058373	chr19:27747981-28491356	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
44	nsv1061090	chr19:27747981-28682929	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
45	nsv1065836	chr19:27751663-28041818	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
46	esv3344040	chr19:27758053-28047852	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
47	esv3345255	chr19:27758073-28047822	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
48	nsv911504	chr19:27763440-27978445	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
49	nsv911505	chr19:27763440-28054130	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
50	nsv911506	chr19:27763440-28066083	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:27964000-27969200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links