Variant report

Variant	rs59276842
Chromosome Location	chr9:136712944-136712945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136705990..136707757-chr9:136711957..136714615,2	MCF-7	breast:
2	chr9:136706828..136709602-chr9:136710306..136713075,3	MCF-7	breast:
3	chr9:136701985..136719064-chr9:136732605..136742545,35	MCF-7	breast:
4	chr9:136712608..136715377-chr9:136715863..136719232,3	K562	blood:
5	chr9:136710893..136713068-chr9:136713762..136715303,2	MCF-7	breast:
6	chr9:136712521..136714249-chr9:136744359..136747348,2	MCF-7	breast:
7	chr9:136711109..136713982-chr9:136718065..136723456,4	MCF-7	breast:
8	chr9:136711485..136713454-chr9:136747435..136749712,2	K562	blood:
9	chr9:136711446..136713878-chr9:136856193..136858493,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10116617	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10993818	1.00[AMR][1000 genomes]
rs10993831	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11507039	1.00[ASN][1000 genomes]
rs2073931	1.00[AMR][1000 genomes]
rs2510250	1.00[ASN][1000 genomes]
rs57099172	1.00[ASN][1000 genomes]
rs59444320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs735520	1.00[ASN][1000 genomes]
rs735521	1.00[ASN][1000 genomes]
rs73554001	1.00[ASN][1000 genomes]
rs73554002	1.00[ASN][1000 genomes]
rs73663861	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv428546	chr9:136541745-136720872	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv894117	chr9:136600201-136716399	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136675200-136728400	Weak transcription	Esophagus	oesophagus
2	chr9:136698400-136718000	Weak transcription	Hela-S3	cervix
3	chr9:136705400-136726800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:136705600-136719200	Weak transcription	Fetal Kidney	kidney
5	chr9:136705800-136721000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:136705800-136724400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:136705800-136726000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:136705800-136729400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:136706000-136726400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:136706600-136714000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:136707200-136726600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:136708000-136713000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:136708000-136716800	Weak transcription	Stomach Mucosa	stomach
14	chr9:136708000-136719600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:136708000-136721000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:136708200-136713600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:136708200-136719200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:136708400-136713800	Weak transcription	Fetal Brain Male	brain
19	chr9:136708600-136713600	Weak transcription	Fetal Brain Female	brain
20	chr9:136708600-136713800	Weak transcription	NHEK	skin
21	chr9:136709000-136715000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:136709000-136728600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:136709200-136714400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:136709600-136715400	Weak transcription	Fetal Intestine Large	intestine
25	chr9:136709800-136718000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr9:136710000-136727400	Weak transcription	Brain Substantia Nigra	brain
27	chr9:136710200-136713600	Weak transcription	Brain Germinal Matrix	brain
28	chr9:136710400-136716200	Weak transcription	GM12878-XiMat	blood
29	chr9:136710400-136719200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr9:136710600-136720200	Weak transcription	Colonic Mucosa	Colon
31	chr9:136710600-136727200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr9:136710800-136715400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:136710800-136725600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:136710800-136728600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:136711000-136717800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr9:136711000-136718600	Weak transcription	Gastric	stomach
37	chr9:136711000-136720000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr9:136711000-136721000	Weak transcription	A549	lung
39	chr9:136711000-136725800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr9:136711200-136713600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:136711200-136718600	Strong transcription	Fetal Intestine Small	intestine
42	chr9:136711200-136719200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr9:136711200-136719400	Weak transcription	NHLF	lung
44	chr9:136711200-136720400	Weak transcription	HSMM	muscle
45	chr9:136711200-136720400	Weak transcription	Osteobl	bone
46	chr9:136711400-136713400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr9:136711400-136715800	Weak transcription	Primary B cells from cord blood	blood
48	chr9:136711400-136718600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr9:136711400-136720200	Weak transcription	Adipose Nuclei	Adipose
50	chr9:136711400-136720200	Weak transcription	Fetal Lung	lung

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