Variant report

Variant	rs59278150
Chromosome Location	chr4:90164051-90164052
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:90160494..90162096-chr4:90163821..90166496,2	K562	blood:
2	chr4:90163083..90164959-chr4:90166186..90168081,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPRIN3-2	chr4:90162421-90164636	NONHSAT097386

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2068207	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv830002	chr4:90056232-90258865	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv3360385	chr4:90133231-90399325	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90159400-90172200	Weak transcription	Thymus	Thymus
2	chr4:90160000-90169000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:90161200-90169600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr4:90161600-90167400	Enhancers	Fetal Heart	heart
5	chr4:90162800-90164400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:90163400-90164400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:90163400-90165000	Enhancers	Brain Hippocampus Middle	brain
8	chr4:90163400-90165000	Enhancers	Fetal Stomach	stomach
9	chr4:90163400-90165000	Enhancers	Ovary	ovary
10	chr4:90163400-90166800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:90163400-90167000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr4:90163400-90167400	Enhancers	Primary T cells from cord blood	blood
13	chr4:90163400-90168600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:90163600-90165000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr4:90163600-90165200	Enhancers	Adipose Nuclei	Adipose
16	chr4:90163600-90165200	Enhancers	Fetal Lung	lung
17	chr4:90163600-90165400	Enhancers	Duodenum Mucosa	Duodenum
18	chr4:90163600-90168800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr4:90163600-90169600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:90163800-90164400	Weak transcription	Fetal Intestine Small	intestine
21	chr4:90163800-90164600	Enhancers	Right Ventricle	heart
22	chr4:90163800-90165200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:90163800-90178000	Weak transcription	Brain Germinal Matrix	brain
24	chr4:90164000-90164600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr4:90164000-90165400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:90164000-90165400	Enhancers	Brain Anterior Caudate	brain
27	chr4:90164000-90165400	Genic enhancers	A549	lung
28	chr4:90164000-90165800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:90164000-90167800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr4:90164000-90168000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr4:90164000-90177600	Weak transcription	Small Intestine	intestine

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