Variant report

Variant	rs59278308
Chromosome Location	chr4:149176908-149176909
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17024512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17024518	1.00[AMR][1000 genomes]
rs3910048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56261324	1.00[AMR][1000 genomes]
rs56705427	1.00[AMR][1000 genomes]
rs59607717	1.00[AMR][1000 genomes]
rs59684436	1.00[AMR][1000 genomes]
rs61017980	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72655230	1.00[AMR][1000 genomes]
rs73855935	1.00[AMR][1000 genomes]
rs73855937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855938	1.00[AMR][1000 genomes]
rs73855939	1.00[AMR][1000 genomes]
rs73855941	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149160800-149179800	Weak transcription	Psoas Muscle	Psoas
2	chr4:149171000-149183600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr4:149171200-149178800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:149172000-149179400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:149175200-149177200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr4:149175200-149179600	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:149175400-149177400	Enhancers	HUVEC	blood vessel
8	chr4:149175600-149177200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:149175600-149182400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:149175600-149195000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr4:149175800-149179400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:149175800-149179600	Weak transcription	Right Ventricle	heart
13	chr4:149176400-149179200	Weak transcription	Left Ventricle	heart
14	chr4:149176400-149182400	Weak transcription	Pancreas	Pancrea
15	chr4:149176400-149186400	Weak transcription	Fetal Intestine Small	intestine
16	chr4:149176400-149188400	Weak transcription	Right Atrium	heart
17	chr4:149176600-149177000	Enhancers	Fetal Kidney	kidney
18	chr4:149176800-149177200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr4:149176800-149179200	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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