Variant report

Variant	rs59278378
Chromosome Location	chr2:67872318-67872319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59769962	1.00[AFR][1000 genomes]
rs72893079	1.00[AFR][1000 genomes]
rs72894944	0.86[AFR][1000 genomes]
rs72905798	0.86[AFR][1000 genomes]
rs72907739	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67866800-67884200	Weak transcription	Aorta	Aorta
2	chr2:67867200-67872400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:67867200-67872600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:67869400-67873600	Weak transcription	Pancreas	Pancrea
5	chr2:67871400-67873400	Enhancers	Fetal Intestine Small	intestine
6	chr2:67871400-67873600	Enhancers	Fetal Intestine Large	intestine
7	chr2:67871600-67873800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:67871800-67873000	Enhancers	Hela-S3	cervix
9	chr2:67872000-67872800	Enhancers	Fetal Lung	lung
10	chr2:67872000-67873000	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr2:67872000-67873200	Enhancers	Fetal Heart	heart
12	chr2:67872000-67873600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:67872000-67873600	Weak transcription	Right Atrium	heart
14	chr2:67872200-67872400	Enhancers	Colon Smooth Muscle	Colon
15	chr2:67872200-67872400	Enhancers	Right Ventricle	heart
16	chr2:67872200-67872400	Enhancers	HSMMtube	muscle
17	chr2:67872200-67873000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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