Variant report

Variant	rs59279341
Chromosome Location	chr7:40273531-40273532
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56881972	1.00[AMR][1000 genomes]
rs57941896	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59957970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61114913	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318537	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318541	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318549	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318557	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318559	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318566	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318584	1.00[AMR][1000 genomes]
rs73318595	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032278	chr7:40097371-40396300	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv464438	chr7:40193535-40350887	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv606710	chr7:40193535-40350887	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1019032	chr7:40204606-40280323	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv887983	chr7:40211563-40284166	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv606711	chr7:40225129-40360257	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv887984	chr7:40227307-40284166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv887985	chr7:40265510-40586674	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40258800-40273800	Weak transcription	Fetal Intestine Small	intestine
2	chr7:40272200-40273600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:40272200-40273600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:40272200-40281200	Weak transcription	HSMMtube	muscle
5	chr7:40272200-40285000	Weak transcription	HSMM	muscle
6	chr7:40272200-40303400	Weak transcription	Liver	Liver
7	chr7:40272400-40273600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:40273400-40274000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr7:40273400-40274400	Enhancers	Fetal Intestine Large	intestine
10	chr7:40273400-40274400	Enhancers	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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