Variant report

Variant	rs59284692
Chromosome Location	chr15:39823533-39823534
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39821827..39824067-chr15:39826356..39828412,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10520134	0.83[AMR][1000 genomes]
rs1551946	0.85[AMR][1000 genomes]
rs1551947	0.83[AMR][1000 genomes]
rs16969254	0.83[AMR][1000 genomes]
rs1876850	1.00[AMR][1000 genomes]
rs1876851	1.00[AMR][1000 genomes]
rs1961097	1.00[AMR][1000 genomes]
rs28390974	1.00[AMR][1000 genomes]
rs28433877	0.85[AMR][1000 genomes]
rs28605448	1.00[AMR][1000 genomes]
rs57383264	0.85[AMR][1000 genomes]
rs58042874	0.85[AMR][1000 genomes]
rs58789628	1.00[AMR][1000 genomes]
rs58886304	0.85[AMR][1000 genomes]
rs61201811	0.85[AMR][1000 genomes]
rs6492901	1.00[AMR][1000 genomes]
rs6492902	0.83[AMR][1000 genomes]
rs6492903	1.00[AMR][1000 genomes]
rs6492904	1.00[AMR][1000 genomes]
rs7162555	0.85[AMR][1000 genomes]
rs7166970	0.85[AMR][1000 genomes]
rs7167136	0.83[AMR][1000 genomes]
rs7167206	1.00[AMR][1000 genomes]
rs7168679	1.00[AMR][1000 genomes]
rs7168836	1.00[AMR][1000 genomes]
rs7174585	0.83[AMR][1000 genomes]
rs7183198	1.00[AMR][1000 genomes]
rs73385184	1.00[AMR][1000 genomes]
rs73385188	1.00[AMR][1000 genomes]
rs73385190	0.85[AMR][1000 genomes]
rs73387008	1.00[AMR][1000 genomes]
rs73387040	0.85[AMR][1000 genomes]
rs73387042	1.00[AMR][1000 genomes]
rs73387053	1.00[AMR][1000 genomes]
rs73387054	1.00[AMR][1000 genomes]
rs73401235	0.83[AMR][1000 genomes]
rs73401240	0.83[AMR][1000 genomes]
rs8024886	0.83[AMR][1000 genomes]
rs8027586	0.83[AMR][1000 genomes]
rs8030858	0.83[AMR][1000 genomes]
rs8038776	0.85[AMR][1000 genomes]
rs8039379	1.00[AMR][1000 genomes]
rs937955	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv832977	chr15:39817512-39981520	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39822200-39824400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:39822600-39823800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr15:39822600-39823800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr15:39822600-39823800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:39822600-39823800	Enhancers	Esophagus	oesophagus
6	chr15:39822800-39823600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr15:39822800-39823600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:39822800-39823600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:39822800-39823600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:39822800-39823600	Enhancers	Colon Smooth Muscle	Colon
11	chr15:39822800-39823600	Bivalent Enhancer	NHDF-Ad	bronchial
12	chr15:39822800-39823600	Enhancers	NHEK	skin
13	chr15:39822800-39823800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr15:39822800-39823800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:39822800-39823800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr15:39822800-39823800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:39822800-39823800	Enhancers	Fetal Lung	lung
18	chr15:39822800-39823800	Enhancers	Fetal Muscle Leg	muscle
19	chr15:39822800-39823800	Enhancers	Hela-S3	cervix
20	chr15:39823000-39823600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr15:39823000-39823600	Enhancers	H9 Cell Line	embryonic stem cell
22	chr15:39823000-39823600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr15:39823000-39823600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:39823000-39823600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:39823000-39823600	Enhancers	Adipose Nuclei	Adipose
26	chr15:39823000-39823600	Enhancers	Duodenum Mucosa	Duodenum
27	chr15:39823000-39824000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:39823200-39823600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:39823200-39823800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr15:39823200-39823800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr15:39823200-39823800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:39823200-39823800	Enhancers	Fetal Muscle Trunk	muscle

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