Variant report

Variant	rs59289377
Chromosome Location	chr6:56724851-56724852
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56722965..56725223-chr6:56732847..56735248,2	K562	blood:
2	chr6:56714030..56717677-chr6:56722118..56725337,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151914	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1903328	1.00[AMR][1000 genomes]
rs57178695	1.00[AMR][1000 genomes]
rs59214825	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56716800-56727200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:56717000-56727200	Weak transcription	Psoas Muscle	Psoas
3	chr6:56717400-56730200	Weak transcription	Ovary	ovary
4	chr6:56717800-56725000	Weak transcription	HUVEC	blood vessel
5	chr6:56717800-56725000	Weak transcription	NH-A	brain
6	chr6:56717800-56725200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:56717800-56727000	Weak transcription	GM12878-XiMat	blood
8	chr6:56717800-56727400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:56717800-56730400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:56718200-56731000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:56718800-56725200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:56719800-56725000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:56721200-56727400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:56721200-56727800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:56721800-56731200	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:56723000-56732600	Weak transcription	Small Intestine	intestine
17	chr6:56724200-56733800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:56724600-56725000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:56724600-56725200	Enhancers	A549	lung
20	chr6:56724600-56725200	Enhancers	Hela-S3	cervix
21	chr6:56724600-56725600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:56724600-56725600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:56724600-56726200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:56724600-56726200	Enhancers	HSMM	muscle
25	chr6:56724600-56726600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:56724600-56728000	Enhancers	HSMMtube	muscle
27	chr6:56724600-56728600	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr6:56724600-56730400	Enhancers	Fetal Intestine Small	intestine
29	chr6:56724800-56725000	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr6:56724800-56725400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:56724800-56725400	Enhancers	Fetal Intestine Large	intestine
32	chr6:56724800-56725600	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:56724800-56725600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:56724800-56725600	Enhancers	HMEC	breast
35	chr6:56724800-56725600	Enhancers	Osteobl	bone
36	chr6:56724800-56725800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:56724800-56725800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:56724800-56726000	Enhancers	NHLF	lung
39	chr6:56724800-56726200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:56724800-56726600	Enhancers	NHDF-Ad	bronchial
41	chr6:56724800-56727200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr6:56724800-56727200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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