Variant report

Variant	rs59292990
Chromosome Location	chr6:15487323-15487324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15243868..15248249-chr6:15486712..15491085,4	K562	blood:
2	chr6:15474412..15476958-chr6:15485865..15488051,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11965672	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11965742	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968665	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15435800-15487600	Weak transcription	Colonic Mucosa	Colon
2	chr6:15461600-15491000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:15471000-15488200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:15471000-15502000	Weak transcription	A549	lung
5	chr6:15471400-15488200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:15476000-15487400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:15476800-15487600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:15477600-15487400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:15477600-15487600	Weak transcription	HepG2	liver
10	chr6:15478200-15487600	Weak transcription	Ovary	ovary
11	chr6:15478400-15487600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:15478600-15487400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:15480200-15487400	Weak transcription	Esophagus	oesophagus
14	chr6:15480200-15487400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:15480400-15487400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:15480400-15487400	Weak transcription	Adipose Nuclei	Adipose
17	chr6:15480400-15487800	Weak transcription	NHLF	lung
18	chr6:15480400-15488200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:15480400-15490600	Weak transcription	NHDF-Ad	bronchial
20	chr6:15480600-15488400	Weak transcription	NH-A	brain
21	chr6:15480800-15487400	Weak transcription	Spleen	Spleen
22	chr6:15480800-15487600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:15480800-15487600	Weak transcription	Fetal Brain Female	brain
24	chr6:15480800-15487600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:15480800-15487800	Weak transcription	Osteobl	bone
26	chr6:15480800-15488200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:15481200-15491800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:15481400-15487400	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr6:15481400-15488400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:15482000-15487600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:15482000-15488400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:15482200-15491400	Weak transcription	Fetal Brain Male	brain
33	chr6:15482400-15487400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr6:15482400-15487800	Weak transcription	Fetal Lung	lung
35	chr6:15482400-15488400	Weak transcription	HSMM	muscle
36	chr6:15482400-15491400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:15482600-15487400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:15483200-15490800	Weak transcription	HSMMtube	muscle
39	chr6:15483200-15491400	Weak transcription	Fetal Heart	heart
40	chr6:15484600-15487400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:15484600-15487400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr6:15484600-15487600	Weak transcription	Liver	Liver
43	chr6:15484600-15487600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:15484800-15487400	Weak transcription	Fetal Intestine Small	intestine
45	chr6:15484800-15487400	Weak transcription	Gastric	stomach
46	chr6:15484800-15487600	Weak transcription	Pancreas	Pancrea
47	chr6:15484800-15488800	Weak transcription	Small Intestine	intestine
48	chr6:15484800-15488800	Weak transcription	Stomach Mucosa	stomach
49	chr6:15484800-15496400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:15485000-15487600	Weak transcription	Aorta	Aorta

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