Variant report

Variant	rs59306210
Chromosome Location	chr2:189420378-189420379
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57280605	0.95[AFR][1000 genomes]
rs58313554	1.00[AFR][1000 genomes]
rs58571834	0.83[AFR][1000 genomes]
rs58988512	1.00[AFR][1000 genomes]
rs60584308	1.00[AFR][1000 genomes]
rs61616655	1.00[AFR][1000 genomes]
rs6710263	0.83[AFR][1000 genomes]
rs6722581	0.95[AFR][1000 genomes]
rs7566545	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv834489	chr2:189329027-189494224	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv533110	chr2:189354436-189462552	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189383200-189422000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:189383200-189423800	Weak transcription	Placenta	Placenta
3	chr2:189384800-189442200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:189388200-189434000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:189395000-189421800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:189395000-189422200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:189395400-189421800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr2:189406800-189422400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:189406800-189425800	Weak transcription	Aorta	Aorta
10	chr2:189414400-189433600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:189414600-189453600	Weak transcription	HUVEC	blood vessel
12	chr2:189416400-189433600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr2:189417000-189445600	Weak transcription	NHLF	lung
14	chr2:189419800-189426600	Weak transcription	A549	lung
15	chr2:189420000-189420600	ZNF genes & repeats	Fetal Lung	lung
16	chr2:189420000-189425400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr2:189420200-189420600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr2:189420200-189454800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links