Variant report

Variant	rs59309290
Chromosome Location	chr6:82019120-82019121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58782554	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59492219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748984	1.00[AMR][1000 genomes]
rs73748987	1.00[AMR][1000 genomes]
rs73750377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750401	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1034440	chr6:82002417-82044834	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82018200-82019600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:82018400-82019200	Flanking Active TSS	Liver	Liver
3	chr6:82018400-82019400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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