Variant report

Variant	rs59311424
Chromosome Location	chr5:151409950-151409951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17735797	1.00[ASN][1000 genomes]
rs294963	1.00[AFR][1000 genomes]
rs72802241	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020223	chr5:151383539-151417923	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151408000-151411200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:151409400-151410000	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr5:151409400-151410000	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr5:151409600-151411200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:151409800-151410200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:151409800-151410400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:151409800-151411400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr5:151409800-151411400	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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