The 2.0 version of rSNPBase
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Variant report
Variant
rs59321204
Chromosome Location
chr4:29969243-29969244
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:1)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
STAT3
chr4:29969087-29969333
MCF10A-Er-Src
breast:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
RPS3AP17
TF binding region
Extended variants information (count: 8 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:8)
rs_ID
r
2
[population]
rs4388047
1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4414915
1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55657325
1.00[ASN][1000 genomes]
rs61792922
1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61795873
1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211245
1.00[ASN][1000 genomes]
rs73215295
0.88[ASN][1000 genomes]
rs73808430
1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links