Variant report

Variant	rs59325270
Chromosome Location	chr7:4757874-4757875
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:4756833..4759526-chr7:4763472..4765275,2	MCF-7	breast:
2	chr7:4752847..4756783-chr7:4756924..4763457,6	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4607503	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56025211	0.93[AFR][1000 genomes]
rs58012005	0.83[AFR][1000 genomes]
rs60440111	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60814186	0.93[AFR][1000 genomes]
rs73303367	0.84[AFR][1000 genomes]
rs73303373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303376	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303383	1.00[AMR][1000 genomes]
rs73303392	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529538	chr7:4509189-5151503	Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv530968	chr7:4572250-5418004	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv508442	chr7:4623264-4769628	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv1031697	chr7:4677463-5241790	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv538704	chr7:4677463-5241790	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv887377	chr7:4730535-4862259	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv887378	chr7:4730535-4929721	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	nsv887379	chr7:4749527-4828593	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:4730800-4761600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:4743800-4763600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr7:4747400-4764600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:4749000-4763600	Weak transcription	HUVEC	blood vessel
5	chr7:4751600-4761800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:4752800-4763800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr7:4752800-4764200	Weak transcription	Colonic Mucosa	Colon
8	chr7:4752800-4764400	Weak transcription	Small Intestine	intestine
9	chr7:4753000-4763800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:4753200-4762000	Weak transcription	A549	lung
11	chr7:4753400-4759600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:4753400-4761400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:4753400-4761800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr7:4753400-4774800	Weak transcription	K562	blood
15	chr7:4753800-4764000	Strong transcription	Fetal Intestine Small	intestine
16	chr7:4754000-4758200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:4754000-4758200	Enhancers	Fetal Heart	heart
18	chr7:4754200-4763800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:4754400-4758600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:4754400-4763600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:4755000-4758400	Strong transcription	Fetal Thymus	thymus
22	chr7:4755200-4758200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr7:4755200-4761600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:4755200-4764000	Weak transcription	Brain Germinal Matrix	brain
25	chr7:4755200-4764200	Weak transcription	HSMM	muscle
26	chr7:4755400-4764200	Weak transcription	NHEK	skin
27	chr7:4755600-4760800	Weak transcription	NHDF-Ad	bronchial
28	chr7:4755600-4761600	Weak transcription	NH-A	brain
29	chr7:4755600-4762000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:4755600-4764200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr7:4755600-4764200	Weak transcription	Stomach Mucosa	stomach
32	chr7:4755800-4758000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:4755800-4759000	Strong transcription	Fetal Stomach	stomach
34	chr7:4755800-4762200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr7:4755800-4762200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr7:4755800-4762600	Weak transcription	Colon Smooth Muscle	Colon
37	chr7:4756000-4758000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr7:4756200-4760800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:4756200-4760800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr7:4756400-4760200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr7:4756400-4760600	Weak transcription	Psoas Muscle	Psoas
42	chr7:4756400-4761800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr7:4756400-4762200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr7:4756400-4762800	Weak transcription	Fetal Lung	lung
45	chr7:4756400-4776800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr7:4756600-4758000	Genic enhancers	Pancreas	Pancrea
47	chr7:4756600-4758200	Genic enhancers	Right Ventricle	heart
48	chr7:4756600-4758400	Enhancers	Right Atrium	heart
49	chr7:4756600-4760400	Strong transcription	Primary T cells from cord blood	blood
50	chr7:4756800-4758200	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links