Variant report

Variant	rs59328408
Chromosome Location	chr15:92493282-92493283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92482980..92487918-chr15:92490119..92494508,7	MCF-7	breast:
2	chr15:92490131..92493308-chr15:92494366..92497413,4	MCF-7	breast:
3	chr15:92486176..92494051-chr15:92494562..92499303,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55767332	1.00[ASN][1000 genomes]
rs57312242	1.00[ASN][1000 genomes]
rs57583649	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs59863085	1.00[ASN][1000 genomes]
rs61191040	0.92[ASN][1000 genomes]
rs73532450	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92485200-92493800	Enhancers	Esophagus	oesophagus
2	chr15:92486800-92493400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:92486800-92493800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:92486800-92493800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:92486800-92495600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr15:92487200-92496200	Weak transcription	Fetal Thymus	thymus
7	chr15:92487200-92496800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:92488000-92493800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:92489200-92493800	Enhancers	Lung	lung
10	chr15:92489200-92494600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr15:92489200-92494800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr15:92489200-92499400	Enhancers	Brain Hippocampus Middle	brain
13	chr15:92489400-92493800	Enhancers	Pancreas	Pancrea
14	chr15:92489400-92494600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:92490000-92498200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:92490200-92498000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr15:92490800-92493800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:92491000-92493400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr15:92491200-92494400	Enhancers	Fetal Heart	heart
20	chr15:92491200-92499000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr15:92491400-92493400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:92491600-92494400	Weak transcription	Fetal Brain Male	brain
23	chr15:92491600-92494600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr15:92491600-92498000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:92491600-92500600	Weak transcription	Psoas Muscle	Psoas
26	chr15:92491800-92493400	Weak transcription	Placenta	Placenta
27	chr15:92491800-92493800	Weak transcription	Small Intestine	intestine
28	chr15:92491800-92494200	Weak transcription	Colon Smooth Muscle	Colon
29	chr15:92491800-92496600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:92491800-92499000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:92492000-92493400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr15:92492000-92493400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr15:92492000-92493400	Weak transcription	Fetal Lung	lung
34	chr15:92492000-92494600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr15:92492000-92496000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:92492000-92496400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:92492000-92497200	Weak transcription	Fetal Intestine Small	intestine
38	chr15:92492000-92497600	Weak transcription	Colonic Mucosa	Colon
39	chr15:92492000-92499200	Weak transcription	Aorta	Aorta
40	chr15:92492000-92499200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr15:92492000-92499400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:92492000-92499400	Weak transcription	Brain Anterior Caudate	brain
43	chr15:92492200-92493400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:92492200-92493600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr15:92492200-92494600	Enhancers	Hela-S3	cervix
46	chr15:92492200-92495600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr15:92492200-92499000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:92492200-92499000	Weak transcription	Osteobl	bone
49	chr15:92492400-92493400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr15:92492400-92493400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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