Variant report

Variant	rs59330201
Chromosome Location	chr10:49085228-49085229
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:49085167-49085484	A549	lung:	n/a	chr10:49085357-49085366
2	CTCF	chr10:49085153-49085517	K562	blood:	n/a	chr10:49085357-49085366
3	CTCF	chr10:49085202-49085490	K562	blood:	n/a	chr10:49085357-49085366
4	CTCF	chr10:49085064-49085613	A549	lung:	n/a	chr10:49085357-49085366
5	CTCF	chr10:49085208-49085499	GM10266	blood:	n/a	chr10:49085357-49085366
6	CTCF	chr10:49085197-49085500	GM13977	blood:	n/a	chr10:49085357-49085366
7	CTCF	chr10:49085180-49085452	A549	lung:	n/a	chr10:49085357-49085366
8	CTCF	chr10:49085194-49085523	A549	lung:	n/a	chr10:49085357-49085366

Variant related genes	Relation type
FAM35EP	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:69 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1048083	chr10:48663587-49292521	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv895347	chr10:48664066-49299273	Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1041008	chr10:48714571-49287591	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1051932	chr10:48714571-49292521	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1039125	chr10:48714571-49299273	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1045833	chr10:48722696-49292521	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1048052	chr10:48771938-49292521	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv469543	chr10:49002272-49087819	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv482502	chr10:49002272-49087819	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv1825478	chr10:49002272-49093686	Inactive region	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv1847833	chr10:49002272-49093686	Inactive region	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
14	esv15655	chr10:49002272-49095498	Inactive region	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv18221	chr10:49002272-49095498	Inactive region	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
16	esv3496989	chr10:49002272-49095536	Inactive region	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
17	esv3496990	chr10:49002272-49095536	Inactive region	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
18	esv1801364	chr10:49002272-49198893	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv895355	chr10:49002272-49201964	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv895352	chr10:49002272-49210024	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv895353	chr10:49002272-49210024	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
22	nsv895354	chr10:49002272-49227624	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
23	esv1799719	chr10:49002272-49245227	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
24	esv1812360	chr10:49002272-49256217	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
25	esv1831372	chr10:49002272-49256217	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
26	esv1846492	chr10:49002272-49256217	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
27	esv1829098	chr10:49002272-49257969	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
28	esv1845539	chr10:49002272-49262927	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
29	esv1819051	chr10:49002272-49265711	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
30	esv1843433	chr10:49002272-49265711	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
31	esv1833079	chr10:49002272-49265911	Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
32	esv1824063	chr10:49002272-49267477	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
33	esv1821312	chr10:49002272-49271312	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
34	esv1816526	chr10:49002272-49271724	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
35	esv1848040	chr10:49002272-49271724	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
36	esv1812124	chr10:49002272-49276934	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
37	esv1818342	chr10:49002272-49276934	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
38	esv1806428	chr10:49002272-49279835	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
39	esv1829638	chr10:49002272-49282297	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
40	esv1813538	chr10:49002272-49282705	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
41	esv1833209	chr10:49002272-49282705	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
42	nsv895351	chr10:49002272-49282705	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
43	nsv1037887	chr10:49002272-49322869	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
44	nsv1045121	chr10:49002272-49322869	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
45	nsv1035447	chr10:49002272-49333393	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
46	nsv1039152	chr10:49002272-49333393	Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
47	nsv1041899	chr10:49002272-49333393	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
48	nsv1043047	chr10:49002272-49333393	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
49	nsv1035424	chr10:49002272-49363009	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
50	nsv1035603	chr10:49002272-49363009	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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