Variant report

Variant	rs59334228
Chromosome Location	chr3:113160914-113160915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1979553	1.00[AMR][1000 genomes]
rs58425568	1.00[AMR][1000 genomes]
rs61454255	1.00[AMR][1000 genomes]
rs72944569	1.00[AMR][1000 genomes]
rs72944571	1.00[AMR][1000 genomes]
rs72944589	1.00[AMR][1000 genomes]
rs72944601	1.00[AMR][1000 genomes]
rs72946703	1.00[AMR][1000 genomes]
rs72946706	1.00[AMR][1000 genomes]
rs72946708	1.00[AMR][1000 genomes]
rs72946740	1.00[AMR][1000 genomes]
rs72946746	1.00[AMR][1000 genomes]
rs72946749	1.00[AMR][1000 genomes]
rs72946750	1.00[AMR][1000 genomes]
rs72946753	1.00[AMR][1000 genomes]
rs72946761	1.00[AMR][1000 genomes]
rs72946769	1.00[AMR][1000 genomes]
rs72946772	1.00[AMR][1000 genomes]
rs72950872	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113074400-113184400	Weak transcription	Hela-S3	cervix
2	chr3:113135200-113164600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:113136000-113176400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:113145800-113166000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:113145800-113176600	Weak transcription	Spleen	Spleen
6	chr3:113146000-113172000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:113146000-113191000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:113146200-113178600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr3:113146400-113165000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:113147000-113165600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:113147400-113165400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:113147600-113162400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:113147800-113178800	Weak transcription	HSMM	muscle
14	chr3:113156000-113179400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:113159200-113161200	Strong transcription	GM12878-XiMat	blood
16	chr3:113159400-113161000	Active TSS	Brain Anterior Caudate	brain
17	chr3:113159400-113163000	Strong transcription	A549	lung
18	chr3:113159800-113161000	Active TSS	Brain Hippocampus Middle	brain
19	chr3:113159800-113161000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:113160000-113161000	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr3:113160000-113161000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr3:113160000-113161000	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr3:113160000-113161000	Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr3:113160000-113161000	Active TSS	Fetal Kidney	kidney
25	chr3:113160200-113161000	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr3:113160200-113161000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:113160200-113161000	Active TSS	Primary T cells from cord blood	blood
28	chr3:113160200-113161000	Active TSS	Brain Substantia Nigra	brain
29	chr3:113160200-113165000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr3:113160200-113167400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:113160200-113176000	Weak transcription	Gastric	stomach
32	chr3:113160200-113190000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:113160400-113162000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr3:113160400-113162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr3:113160400-113162200	Weak transcription	Primary B cells from peripheral blood	blood
36	chr3:113160400-113164600	Weak transcription	Liver	Liver
37	chr3:113160400-113165000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:113160400-113176000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:113160400-113186800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr3:113160400-113188800	Weak transcription	Colonic Mucosa	Colon
41	chr3:113160400-113191200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:113160400-113192800	Weak transcription	Stomach Mucosa	stomach
43	chr3:113160600-113161000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:113160600-113162000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:113160600-113162000	Weak transcription	Dnd41	blood
46	chr3:113160600-113162200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:113160600-113163000	Weak transcription	NHDF-Ad	bronchial
48	chr3:113160600-113165000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr3:113160600-113166200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:113160600-113168800	Weak transcription	Primary monocytes fromperipheralblood	blood

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