Variant report

Variant	rs59336125
Chromosome Location	chr15:77395109-77395110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77390348..77392249-chr15:77393054..77395788,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28542588	0.90[AFR][1000 genomes]
rs74025080	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77376800-77395600	Weak transcription	Fetal Intestine Small	intestine
2	chr15:77387000-77404200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:77389200-77396200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:77390200-77395800	Weak transcription	Spleen	Spleen
5	chr15:77390200-77404200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:77390400-77396200	Weak transcription	Fetal Stomach	stomach
7	chr15:77390400-77396400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:77390400-77406400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:77392000-77395200	Enhancers	HepG2	liver
10	chr15:77392000-77396600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:77393400-77397200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr15:77393600-77395600	Weak transcription	Fetal Thymus	thymus
13	chr15:77393600-77396600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:77393600-77399600	Weak transcription	Brain Anterior Caudate	brain
15	chr15:77393800-77403400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr15:77394000-77399800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:77394200-77397200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:77394400-77399200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:77394400-77399400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:77394600-77404200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:77394600-77413400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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