Variant report

Variant	rs59337858
Chromosome Location	chr11:63608919-63608920
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63608154..63610966-chr11:64109676..64111363,2	K562	blood:
2	chr11:63579651..63582051-chr11:63608159..63610304,2	MCF-7	breast:
3	chr11:63608850..63609389-chr11:63639613..63640274,2	MCF-7	breast:
4	chr11:63607856..63610979-chr11:63704708..63707204,3	MCF-7	breast:
5	chr11:63607750..63611534-chr11:63627673..63634127,5	MCF-7	breast:
6	chr11:63607647..63610591-chr11:63667055..63669297,3	MCF-7	breast:
7	chr11:63605131..63609420-chr11:63682910..63687369,4	MCF-7	breast:
8	chr11:63604963..63609785-chr11:63634052..63642181,26	MCF-7	breast:
9	chr11:63603311..63612666-chr11:63664740..63679491,25	MCF-7	breast:
10	chr11:63606304..63609239-chr11:63647374..63650317,2	MCF-7	breast:
11	chr11:63606175..63608969-chr11:63932687..63934753,2	MCF-7	breast:
12	chr11:63579552..63584409-chr11:63604789..63609677,6	K562	blood:
13	chr11:63607143..63610825-chr11:63931420..63934315,4	MCF-7	breast:
14	chr11:63608840..63610534-chr11:63656081..63658372,2	MCF-7	breast:
15	chr11:63603344..63615182-chr11:63634321..63647771,46	MCF-7	breast:
16	chr11:63608184..63610790-chr11:63772494..63774086,2	K562	blood:
17	chr11:63437870..63440205-chr11:63606706..63609553,2	MCF-7	breast:
18	chr11:63605094..63609854-chr11:63611414..63617957,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168005	Chromatin interaction
ENSG00000110583	Chromatin interaction
ENSG00000167771	Chromatin interaction
ENSG00000184743	Chromatin interaction
ENSG00000133315	Chromatin interaction
ENSG00000072518	Chromatin interaction
ENSG00000202089	Chromatin interaction
ENSG00000168071	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1499641	1.00[AMR][1000 genomes]
rs2133545	1.00[AMR][1000 genomes]
rs320106	1.00[AMR][1000 genomes]
rs320132	1.00[AMR][1000 genomes]
rs56892076	1.00[AMR][1000 genomes]
rs60996420	1.00[AMR][1000 genomes]
rs73492280	0.89[AFR][1000 genomes]
rs73492282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494137	1.00[AMR][1000 genomes]
rs73494180	1.00[AMR][1000 genomes]
rs7948086	1.00[AMR][1000 genomes]
rs9943478	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63607000-63609000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:63607000-63609000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:63607000-63609200	Flanking Active TSS	Adipose Nuclei	Adipose
4	chr11:63607000-63609200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr11:63607000-63609400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr11:63607000-63609800	Flanking Active TSS	Brain Germinal Matrix	brain
7	chr11:63607200-63609000	Flanking Active TSS	Liver	Liver
8	chr11:63607200-63609000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
9	chr11:63607200-63609200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr11:63607200-63609200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:63607200-63609200	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr11:63607200-63609600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:63607400-63609200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:63607400-63609400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:63607400-63609400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr11:63607400-63609400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr11:63607400-63609400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
18	chr11:63607400-63609400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
19	chr11:63607400-63609400	Flanking Active TSS	Rectal Smooth Muscle	rectum
20	chr11:63607400-63609400	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr11:63607400-63609400	Flanking Active TSS	HUVEC	blood vessel
22	chr11:63607400-63609600	Flanking Active TSS	Brain Angular Gyrus	brain
23	chr11:63607400-63609600	Flanking Active TSS	Fetal Brain Female	brain
24	chr11:63607600-63609000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
25	chr11:63607600-63609000	Flanking Active TSS	Fetal Stomach	stomach
26	chr11:63607600-63609200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr11:63607600-63609200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr11:63607600-63609200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:63607600-63609200	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr11:63607600-63609400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr11:63607600-63609400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr11:63607600-63609400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr11:63607600-63609400	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr11:63607600-63609400	Flanking Active TSS	Osteobl	bone
35	chr11:63607600-63609600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
36	chr11:63607600-63609600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:63607600-63609600	Flanking Active TSS	HMEC	breast
38	chr11:63607600-63609600	Flanking Active TSS	NH-A	brain
39	chr11:63607800-63609000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:63607800-63609000	Flanking Active TSS	Placenta	Placenta
41	chr11:63607800-63609200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr11:63607800-63609200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:63607800-63609200	Flanking Active TSS	A549	lung
44	chr11:63607800-63609200	Flanking Active TSS	HSMM	muscle
45	chr11:63607800-63609400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:63607800-63609400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:63607800-63609600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
48	chr11:63607800-63609600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr11:63607800-63609600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:63607800-63609600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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