Variant report

Variant	rs59338764
Chromosome Location	chr6:150690600-150690601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3393784	chr6:150689259-150693557	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150689200-150693200	Enhancers	Fetal Intestine Large	intestine
2	chr6:150689200-150693400	Enhancers	Fetal Intestine Small	intestine
3	chr6:150689600-150690800	Active TSS	Duodenum Mucosa	Duodenum
4	chr6:150689600-150691000	Enhancers	Stomach Mucosa	stomach
5	chr6:150689800-150691800	Flanking Active TSS	Liver	Liver
6	chr6:150690000-150691600	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr6:150690200-150690600	Active TSS	Rectal Smooth Muscle	rectum
8	chr6:150690200-150690600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr6:150690200-150690800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
10	chr6:150690200-150691400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:150690200-150691600	Active TSS	Colonic Mucosa	Colon
12	chr6:150690400-150690600	Bivalent Enhancer	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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