Variant report

Variant	rs59349616
Chromosome Location	chr2:114867290-114867291
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11883968	1.00[EUR][1000 genomes]
rs156725	1.00[EUR][1000 genomes]
rs55939201	0.87[AFR][1000 genomes]
rs57220360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57968253	1.00[EUR][1000 genomes]
rs58544657	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv829624	chr2:114791945-115119926	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3381703	chr2:114794745-114989429	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3369966	chr2:114867182-114869130	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114865400-114867400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:114866000-114867400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:114866000-114867400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:114866000-114867600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:114866200-114867400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr2:114866200-114867400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:114866200-114867400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:114866400-114867400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:114866400-114867400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:114866400-114867400	Enhancers	Aorta	Aorta
11	chr2:114866600-114867400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr2:114866600-114867400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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