Variant report

Variant	rs59350392
Chromosome Location	chr6:30591560-30591561
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30590937..30593693-chr6:30609375..30612097,3	MCF-7	breast:
2	chr6:30591157..30598732-chr6:30607879..30619621,21	K562	blood:
3	chr6:30591212..30593070-chr6:30654057..30656652,2	MCF-7	breast:
4	chr6:30590782..30598373-chr6:30685661..30690473,13	MCF-7	breast:
5	chr6:30591444..30595401-chr6:30685466..30689259,5	K562	blood:

Variant related genes	Relation type
ENSG00000196230	Chromatin interaction
ENSG00000137337	Chromatin interaction
ENSG00000137343	Chromatin interaction
ENSG00000266183	Chromatin interaction
ENSG00000204564	Chromatin interaction
ENSG00000146112	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4148249	0.80[AFR][1000 genomes]
rs57839584	1.00[EUR][1000 genomes]
rs58344693	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61109058	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
4	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
5	esv3430377	chr6:30443802-30814426	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	967 gene(s)	inside rSNPs	diseases
6	nsv884086	chr6:30462084-30672757	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	798 gene(s)	inside rSNPs	diseases
7	nsv830626	chr6:30558064-30732905	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	406 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30586400-30592000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:30586400-30592600	Weak transcription	Aorta	Aorta
3	chr6:30586400-30594200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:30586400-30594600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:30586600-30594400	Weak transcription	Right Atrium	heart
6	chr6:30586600-30594600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:30586800-30594400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:30587000-30593600	Strong transcription	Fetal Muscle Leg	muscle
9	chr6:30587000-30594000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:30587000-30594000	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:30587000-30594000	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:30587000-30594000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr6:30587000-30594000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:30587000-30594000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:30587000-30594200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:30587000-30594200	Strong transcription	Osteobl	bone
17	chr6:30587000-30594400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:30587200-30592400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:30587200-30593400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:30587200-30593800	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:30587200-30593800	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr6:30587200-30593800	Strong transcription	HSMMtube	muscle
23	chr6:30587200-30594000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:30587200-30594000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:30587200-30594000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:30587200-30594000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:30587200-30594000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:30587200-30594000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:30587200-30594000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:30587200-30594000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:30587200-30594000	Strong transcription	Brain Angular Gyrus	brain
32	chr6:30587200-30594000	Strong transcription	Brain Anterior Caudate	brain
33	chr6:30587200-30594000	Strong transcription	Brain Cingulate Gyrus	brain
34	chr6:30587200-30594000	Strong transcription	Brain Hippocampus Middle	brain
35	chr6:30587200-30594000	Strong transcription	Brain Substantia Nigra	brain
36	chr6:30587200-30594000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:30587200-30594000	Strong transcription	Fetal Muscle Trunk	muscle
38	chr6:30587200-30594000	Strong transcription	Placenta	Placenta
39	chr6:30587200-30594000	Strong transcription	Stomach Smooth Muscle	stomach
40	chr6:30587200-30594000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr6:30587200-30594200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:30587200-30594200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:30587200-30594200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:30587400-30593400	Strong transcription	K562	blood
45	chr6:30587400-30593600	Strong transcription	Fetal Intestine Small	intestine
46	chr6:30587400-30593600	Strong transcription	A549	lung
47	chr6:30587400-30593800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:30587400-30593800	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr6:30587400-30593800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:30587400-30593800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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