Variant report

Variant	rs59368559
Chromosome Location	chr10:895734-895735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:893412..896074-chr10:1094765..1097365,2	MCF-7	breast:
2	chr10:894692..896712-chr10:899328..902743,3	MCF-7	breast:
3	chr10:887619..890410-chr10:894669..896676,2	MCF-7	breast:
4	chr10:893358..896281-chr10:973770..977701,3	MCF-7	breast:
5	chr10:890079..892207-chr10:894846..896504,2	K562	blood:
6	chr10:895582..897748-chr10:1030180..1032375,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067064	Chromatin interaction
ENSG00000107929	Chromatin interaction
ENSG00000047056	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61304340	1.00[EUR][1000 genomes]
rs6560862	1.00[AMR][1000 genomes]
rs7900446	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916591	chr10:224406-1088734	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv948602	chr10:708293-944641	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv949063	chr10:708293-974870	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
7	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
8	nsv1043812	chr10:776547-981126	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv540406	chr10:776547-981126	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
11	nsv948978	chr10:813426-1019115	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1048707	chr10:834439-915534	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:851800-895800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:852200-956400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:869600-896000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr10:870000-896400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr10:870600-959400	Weak transcription	Stomach Mucosa	stomach
6	chr10:875400-903000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:883200-917200	Weak transcription	Colonic Mucosa	Colon
8	chr10:884200-895800	Strong transcription	Primary T cells from cord blood	blood
9	chr10:886400-902800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:886800-924400	Weak transcription	Fetal Brain Male	brain
11	chr10:889000-895800	Weak transcription	Brain Germinal Matrix	brain
12	chr10:890000-900000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:890400-896200	Strong transcription	Dnd41	blood
14	chr10:890400-901800	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:890400-902200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:890400-902600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:890400-916000	Weak transcription	Aorta	Aorta
18	chr10:890600-897400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:890800-895800	Weak transcription	Fetal Brain Female	brain
20	chr10:890800-901200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:891000-896200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:891600-896400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr10:891600-898800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:891600-901400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr10:891800-895800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:891800-898000	Weak transcription	Hela-S3	cervix
27	chr10:892000-896000	Weak transcription	Brain Anterior Caudate	brain
28	chr10:892200-895800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:892200-895800	Strong transcription	NHEK	skin
30	chr10:892200-896200	Strong transcription	HMEC	breast
31	chr10:892200-901600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:892400-895800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:892400-902400	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:892600-903000	Weak transcription	Brain Angular Gyrus	brain
35	chr10:892600-909400	Weak transcription	Small Intestine	intestine
36	chr10:892800-896000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:892800-909000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:892800-909000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:893000-896000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:893000-896000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:893000-896000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:893000-896200	Strong transcription	HepG2	liver
43	chr10:893000-899600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr10:893000-900800	Strong transcription	Fetal Lung	lung
45	chr10:893000-902400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr10:893000-902400	Weak transcription	Right Atrium	heart
47	chr10:893000-902800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:893000-907600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:893000-909400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr10:893200-898600	Weak transcription	NH-A	brain

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