Variant report

Variant	rs59385551
Chromosome Location	chr12:21507086-21507087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17418255	0.85[EUR][1000 genomes]
rs73080814	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21504200-21513200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:21505200-21507200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr12:21506200-21508600	Enhancers	K562	blood
4	chr12:21506400-21507200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:21506600-21509400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:21506600-21509400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr12:21506800-21507400	Flanking Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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