Variant report

Variant	rs59391552
Chromosome Location	chr3:161275222-161275223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16832526	0.86[ASN][1000 genomes]
rs16832658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1825400	0.86[ASN][1000 genomes]
rs6778346	0.86[ASN][1000 genomes]
rs6779032	0.86[ASN][1000 genomes]
rs6785379	0.86[ASN][1000 genomes]
rs6787829	0.86[ASN][1000 genomes]
rs6795310	0.86[ASN][1000 genomes]
rs73875626	0.86[ASN][1000 genomes]
rs73875635	0.86[ASN][1000 genomes]
rs73875638	0.86[ASN][1000 genomes]
rs73875639	0.86[ASN][1000 genomes]
rs73875642	1.00[ASN][1000 genomes]
rs73878332	0.86[ASN][1000 genomes]
rs9872424	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161269200-161276800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:161270200-161275800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:161271400-161275400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:161271400-161276000	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:161272200-161276800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:161272800-161279600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:161273600-161275400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:161274200-161275600	Enhancers	Dnd41	blood
9	chr3:161274600-161275800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:161274600-161276400	Enhancers	Fetal Stomach	stomach
11	chr3:161275000-161275800	Enhancers	Brain Germinal Matrix	brain
12	chr3:161275000-161275800	Weak transcription	Fetal Heart	heart
13	chr3:161275200-161277800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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