Variant report

Variant	rs59394800
Chromosome Location	chr5:126657543-126657544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61512582	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126648000-126674800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:126655200-126658400	Enhancers	H9 Cell Line	embryonic stem cell
3	chr5:126655400-126657600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:126655400-126658200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:126655400-126658400	Enhancers	Brain Hippocampus Middle	brain
6	chr5:126655600-126658200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr5:126655600-126658200	Enhancers	Brain Substantia Nigra	brain
8	chr5:126655600-126659600	Enhancers	Brain Cingulate Gyrus	brain
9	chr5:126655800-126657600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:126655800-126657600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:126655800-126658200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:126655800-126658400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:126655800-126658400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:126655800-126658400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr5:126655800-126659200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:126656200-126657600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr5:126656600-126658000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:126656600-126660200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:126656600-126665600	Weak transcription	Fetal Muscle Leg	muscle
20	chr5:126656600-126673400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:126656800-126657800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:126656800-126657800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:126656800-126657800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:126656800-126658000	Weak transcription	Brain Anterior Caudate	brain
25	chr5:126656800-126659000	Weak transcription	Brain Angular Gyrus	brain
26	chr5:126656800-126660400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr5:126656800-126667600	Weak transcription	HSMMtube	muscle
28	chr5:126657200-126659000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr5:126657400-126657600	Enhancers	GM12878-XiMat	blood
30	chr5:126657400-126657800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr5:126657400-126658200	Enhancers	H1 Cell Line	embryonic stem cell
32	chr5:126657400-126658200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr5:126657400-126658200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr5:126657400-126658200	Enhancers	Pancreas	Pancrea

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