Variant report

Variant	rs59405466
Chromosome Location	chr15:31802557-31802558
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62004096	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8038975	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3392773	chr15:31801685-31804433	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv3424696	chr15:31801985-31805258	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3408511	chr15:31802185-31805233	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
11	esv2565352	chr15:31802456-31804209	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31782400-31821000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:31787200-31810800	Weak transcription	Pancreas	Pancrea
3	chr15:31797000-31814200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:31801600-31802600	Enhancers	Fetal Muscle Trunk	muscle
5	chr15:31802200-31802600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr15:31802200-31802600	Enhancers	Fetal Brain Male	brain
7	chr15:31802200-31802600	Enhancers	Fetal Muscle Leg	muscle
8	chr15:31802200-31802600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr15:31802400-31802600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:31802400-31802600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr15:31802400-31802600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:31802400-31802600	Enhancers	Brain Angular Gyrus	brain
13	chr15:31802400-31802600	Enhancers	Brain Anterior Caudate	brain
14	chr15:31802400-31802600	Enhancers	Brain Hippocampus Middle	brain
15	chr15:31802400-31802600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
16	chr15:31802400-31802600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:31802400-31802600	Enhancers	Brain Substantia Nigra	brain
18	chr15:31802400-31802600	Flanking Active TSS	Fetal Brain Female	brain
19	chr15:31802400-31802600	Enhancers	Left Ventricle	heart
20	chr15:31802400-31802600	Enhancers	Lung	lung
21	chr15:31802400-31802600	Flanking Active TSS	Psoas Muscle	Psoas
22	chr15:31802400-31802600	Flanking Active TSS	HSMM	muscle
23	chr15:31802400-31802600	Bivalent Enhancer	HSMMtube	muscle

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