Variant report

Variant	rs59409220
Chromosome Location	chr21:28155272-28155273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11909535	1.00[AMR][1000 genomes]
rs11911960	1.00[AMR][1000 genomes]
rs16979411	1.00[AMR][1000 genomes]
rs58851617	1.00[AMR][1000 genomes]
rs60216130	1.00[AMR][1000 genomes]
rs73370037	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066573	chr21:28096356-28374354	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1057400	chr21:28104936-28359948	Strong transcription Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28153400-28155400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr21:28154000-28156000	Enhancers	Fetal Muscle Leg	muscle
3	chr21:28154000-28156000	Enhancers	Fetal Stomach	stomach
4	chr21:28154000-28156200	Enhancers	Rectal Smooth Muscle	rectum
5	chr21:28154000-28156200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr21:28154000-28157000	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr21:28154200-28157400	Weak transcription	Psoas Muscle	Psoas
8	chr21:28154200-28161200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr21:28154800-28156400	Enhancers	HSMMtube	muscle
10	chr21:28154800-28157000	Enhancers	Fetal Heart	heart
11	chr21:28155000-28155800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr21:28155000-28156200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr21:28155000-28160800	Weak transcription	Aorta	Aorta
14	chr21:28155200-28155400	Enhancers	Ovary	ovary
15	chr21:28155200-28155600	Weak transcription	Colon Smooth Muscle	Colon
16	chr21:28155200-28158000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr21:28155200-28161200	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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