Variant report

Variant	rs59419511
Chromosome Location	chr14:31707594-31707595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12590908	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4378534	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72642548	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72642549	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72642550	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72642551	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72642552	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31699600-31707600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:31701800-31708600	Weak transcription	K562	blood
3	chr14:31703000-31710200	Weak transcription	Fetal Heart	heart
4	chr14:31707000-31708600	Weak transcription	GM12878-XiMat	blood
5	chr14:31707000-31708800	Weak transcription	HepG2	liver
6	chr14:31707200-31707600	Weak transcription	Stomach Mucosa	stomach
7	chr14:31707400-31707800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:31707400-31707800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:31707400-31707800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:31707400-31707800	Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr14:31707400-31707800	ZNF genes & repeats	Esophagus	oesophagus
12	chr14:31707400-31707800	ZNF genes & repeats	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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