Variant report

Variant	rs5942915
Chromosome Location	chrX:109549026-109549027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2294504	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs3788769	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6642423	0.87[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369563	chrX:109079631-109573656	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	nsv518116	chrX:109424029-109630707	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109529800-109553400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chrX:109531800-109558000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chrX:109533400-109553400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chrX:109537800-109553600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chrX:109541800-109553600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chrX:109544200-109553600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chrX:109544600-109553600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chrX:109546800-109552600	Weak transcription	K562	blood
9	chrX:109546800-109554000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chrX:109548200-109551600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chrX:109548400-109550600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chrX:109548600-109559400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chrX:109548800-109551600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chrX:109549000-109549200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chrX:109549000-109551800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chrX:109549000-109552000	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links