Variant report

Variant	rs59429746
Chromosome Location	chr12:64396608-64396609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64395336..64397715-chr5:138219913..138222296,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000044115	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4516057	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832442	chr12:64228071-64442771	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv747	chr12:64391572-64423998	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	nsv437756	chr12:64392500-64411870	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64377200-64400200	Weak transcription	Brain Germinal Matrix	brain
2	chr12:64380200-64433000	Weak transcription	Fetal Intestine Large	intestine
3	chr12:64382800-64399400	Weak transcription	HUVEC	blood vessel
4	chr12:64382800-64432800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr12:64383000-64401200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr12:64383600-64397600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:64383800-64425400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr12:64384600-64404000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr12:64385000-64401000	Weak transcription	Ovary	ovary
10	chr12:64385000-64408800	Weak transcription	Hela-S3	cervix
11	chr12:64385000-64425600	Weak transcription	Left Ventricle	heart
12	chr12:64385200-64399600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr12:64385800-64399600	Weak transcription	NH-A	brain
14	chr12:64386600-64400000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:64386800-64397800	Weak transcription	Brain Angular Gyrus	brain
16	chr12:64386800-64403600	Weak transcription	Brain Substantia Nigra	brain
17	chr12:64386800-64404200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr12:64388800-64399000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr12:64388800-64399800	Weak transcription	Brain Hippocampus Middle	brain
20	chr12:64388800-64400200	Weak transcription	Fetal Brain Male	brain
21	chr12:64388800-64429800	Weak transcription	Pancreas	Pancrea
22	chr12:64389200-64400000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr12:64389400-64419200	Weak transcription	Fetal Kidney	kidney
24	chr12:64389400-64419200	Weak transcription	Fetal Lung	lung
25	chr12:64389600-64398200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr12:64389600-64398200	Weak transcription	Osteobl	bone
27	chr12:64389600-64417400	Weak transcription	Fetal Muscle Leg	muscle
28	chr12:64391800-64401600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr12:64392800-64396800	Strong transcription	A549	lung
30	chr12:64393400-64400000	Weak transcription	NHEK	skin
31	chr12:64394000-64400000	Weak transcription	NHLF	lung
32	chr12:64395400-64412400	Weak transcription	HMEC	breast
33	chr12:64395600-64400000	Weak transcription	Right Atrium	heart
34	chr12:64395600-64403600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr12:64396000-64401200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr12:64396000-64415600	Weak transcription	Fetal Brain Female	brain
37	chr12:64396200-64397800	Weak transcription	HSMM	muscle
38	chr12:64396200-64398200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr12:64396200-64399600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr12:64396200-64400000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr12:64396200-64400200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr12:64396400-64397400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr12:64396400-64398400	Weak transcription	NHDF-Ad	bronchial
44	chr12:64396400-64399600	Weak transcription	HSMMtube	muscle
45	chr12:64396400-64399800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr12:64396400-64400000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr12:64396400-64400000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr12:64396400-64414000	Weak transcription	Psoas Muscle	Psoas
49	chr12:64396600-64398400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr12:64396600-64404000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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