Variant report

Variant	rs5943064
Chromosome Location	chrX:110039716-110039717
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chrX:110039093-110039787	HEK293-T-REx	kidney:	n/a	chrX:110039479-110039500 chrX:110039490-110039499
2	RCOR1	chrX:110039636-110039797	K562	blood:	n/a	n/a
3	POLR2A	chrX:110038879-110039725	H1-hESC	embryonic stem cell:	n/a	n/a
4	RCOR1	chrX:110039550-110039882	K562	blood:	n/a	n/a
5	HDAC2	chrX:110039633-110039883	K562	blood:	n/a	n/a

Variant related genes	Relation type
CHRDL1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1480835	0.84[YRI][hapmap]
rs1480837	1.00[MKK][hapmap];0.83[YRI][hapmap]
rs5943063	0.84[YRI][hapmap]
rs5943091	0.89[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:110037800-110039800	Active TSS	Primary hematopoietic stem cells short term culture	blood
2	chrX:110037800-110039800	Active TSS	Colon Smooth Muscle	Colon
3	chrX:110038400-110039800	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chrX:110038400-110039800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chrX:110038400-110039800	Active TSS	NH-A	brain
6	chrX:110038600-110039800	Active TSS	H9 Cell Line	embryonic stem cell
7	chrX:110038600-110039800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chrX:110038600-110039800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chrX:110038600-110039800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chrX:110038600-110039800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
11	chrX:110038600-110039800	Active TSS	Brain Inferior Temporal Lobe	brain
12	chrX:110038600-110039800	Bivalent/Poised TSS	Fetal Stomach	stomach
13	chrX:110038600-110039800	Active TSS	Right Atrium	heart
14	chrX:110038600-110039800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
15	chrX:110038600-110040000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chrX:110038800-110039800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chrX:110038800-110039800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chrX:110038800-110039800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chrX:110038800-110039800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chrX:110038800-110039800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chrX:110038800-110039800	Active TSS	Brain Cingulate Gyrus	brain
22	chrX:110038800-110039800	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
23	chrX:110039000-110039800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chrX:110039000-110039800	Enhancers	Primary B cells from cord blood	blood
25	chrX:110039000-110040000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chrX:110039200-110039800	Active TSS	Primary T cells from cord blood	blood
27	chrX:110039200-110039800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chrX:110039200-110039800	Active TSS	A549	lung
29	chrX:110039400-110039800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
30	chrX:110039400-110039800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chrX:110039400-110039800	Enhancers	Primary B cells from peripheral blood	blood
32	chrX:110039400-110039800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chrX:110039400-110039800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chrX:110039400-110039800	Bivalent/Poised TSS	Adipose Nuclei	Adipose
35	chrX:110039400-110039800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
36	chrX:110039400-110039800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
37	chrX:110039400-110039800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
38	chrX:110039400-110040000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
39	chrX:110039400-110040000	Bivalent/Poised TSS	Fetal Kidney	kidney
40	chrX:110039600-110039800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
41	chrX:110039600-110039800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chrX:110039600-110039800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chrX:110039600-110039800	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chrX:110039600-110039800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chrX:110039600-110039800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chrX:110039600-110039800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
47	chrX:110039600-110039800	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chrX:110039600-110039800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chrX:110039600-110039800	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chrX:110039600-110039800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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