Variant report

Variant	rs59439636
Chromosome Location	chr17:66390978-66390979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:66389337..66392339-chr17:66393132..66396716,3	K562	blood:
2	chr17:66390399..66392735-chr17:66392746..66395259,2	MCF-7	breast:
3	chr17:66390902..66393110-chr17:66399070..66401474,2	MCF-7	breast:
4	chr17:66286260..66290151-chr17:66389633..66391426,3	MCF-7	breast:
5	chr17:66390166..66392142-chr17:66393386..66395992,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108932	Chromatin interaction
ENSG00000141337	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11077542	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11870010	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12453020	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12945490	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12947036	0.84[EUR][1000 genomes]
rs12948224	0.82[EUR][1000 genomes]
rs35722605	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs62085878	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66374800-66391000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr17:66374800-66391000	Weak transcription	Esophagus	oesophagus
3	chr17:66380400-66391000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:66380800-66393000	Weak transcription	Primary T cells from cord blood	blood
5	chr17:66381000-66392800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr17:66381000-66393000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr17:66381000-66394800	Weak transcription	Primary B cells from cord blood	blood
8	chr17:66381000-66394800	Weak transcription	Fetal Kidney	kidney
9	chr17:66381400-66391000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr17:66382000-66391000	Weak transcription	Lung	lung
11	chr17:66382800-66391200	Weak transcription	Brain Hippocampus Middle	brain
12	chr17:66383000-66391000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr17:66383000-66391000	Weak transcription	Aorta	Aorta
14	chr17:66383600-66395800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr17:66383800-66391200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr17:66384000-66394400	Weak transcription	Fetal Heart	heart
17	chr17:66385400-66393000	Weak transcription	Hela-S3	cervix
18	chr17:66385600-66391000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr17:66387800-66392600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr17:66388000-66394800	Weak transcription	Pancreas	Pancrea
21	chr17:66388200-66391000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr17:66388200-66391200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr17:66388200-66391200	Enhancers	HepG2	liver
24	chr17:66389800-66391000	Weak transcription	Liver	Liver
25	chr17:66390200-66391400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
26	chr17:66390200-66392000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr17:66390200-66394000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr17:66390400-66391000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr17:66390400-66391600	ZNF genes & repeats	Thymus	Thymus
30	chr17:66390400-66392000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
31	chr17:66390600-66391000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr17:66390600-66391400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
33	chr17:66390600-66391600	ZNF genes & repeats	Dnd41	blood
34	chr17:66390800-66391000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
35	chr17:66390800-66391200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
36	chr17:66390800-66391400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
37	chr17:66390800-66391400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
38	chr17:66390800-66391400	ZNF genes & repeats	Brain Anterior Caudate	brain
39	chr17:66390800-66391600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
40	chr17:66390800-66391800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr17:66390800-66392000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood

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